Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017120 Citrullus lanatus HOM05D007173 ORTHO05D009589 7.6e-135 483.8 238 100.0
Cpa.g.sc332.2 Carica papaya HOM05D007173 ORTHO05D009589 8.1e-36 154.8 317 36.6
ClCG05G017170 Citrullus lanatus HOM05D000424 ORTHO05D009589 2.1e-20 103.6 126 50.8
CsaV3_3G046640 Cucumis sativus L. HOM05D000424 ORTHO05D009589 4.5e-18 95.9 125 48.0
Sabra18G0034700 Salix brachista HOM05D007173 ORTHO05D009589 5.8e-18 95.5 186 37.1
MELO3C003674.2 Cucumis melo HOM05D000424 ORTHO05D009589 9.9e-18 94.7 124 47.6
Sed0018076 Sechium edule HOM05D000424 ORTHO05D009589 4.9e-17 92.4 54 85.2
CSS0033814 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D009589 1.9e-13 80.5 126 41.3
Gohir.A06G047500 Gossypium hirsutum HOM05D000424 ORTHO05D009589 1.6e-12 77.4 331 26.0
QL01p004428 Quercus lobata HOM05D000424 ORTHO05D009589 1.5e-10 70.9 50 72.0
QL01p004528 Quercus lobata HOM05D000424 ORTHO05D009589 1.5e-10 70.9 50 72.0
Dinv11586 Davidia involucrata HOM05D000424 ORTHO05D009589 4.5e-10 69.3 96 42.7
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 5.8e-10 68.9 213 25.8
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 7.6e-10 68.6 213 25.8
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 1.3e-09 67.8 271 23.6
GSVIVG01035798001 Vitis vinifera HOM05D000424 ORTHO05D009589 2.2e-09 67.0 50 66.0
CANSAT11G1648 Cannabis sativa HOM05D000424 ORTHO05D009589 3.8e-09 66.2 48 72.9
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 3.8e-09 66.2 182 29.1
Manes.12G158300 Manihot esculenta HOM05D007173 ORTHO05D009151 3.8e-09 66.2 139 30.9
Manes.03G065400 Manihot esculenta HOM05D000424 ORTHO05D009589 4.9e-09 65.9 50 66.0
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 6.4e-09 65.5 213 25.8
Prupe.1G467400 Prunus persica HOM05D000424 ORTHO05D009589 1.4e-08 64.3 84 45.2
Haze_21616 Corylus avellana HOM05D000424 ORTHO05D009589 2.5e-08 63.5 48 66.7
FvH4_2g30070 Fragaria vesca HOM05D000424 ORTHO05D009589 3.2e-08 63.2 50 64.0
FAN15G3155 Fragaria x ananassa HOM05D000424 ORTHO05D009589 3.2e-08 63.2 50 64.0
FAN20G2781 Fragaria x ananassa HOM05D000424 ORTHO05D009589 3.2e-08 63.2 50 64.0
Nitab4.5_0005873g0010 Nicotiana tabacum HOM05D000424 ORTHO05D009589 3.2e-08 63.2 104 38.5
TWI34G0609 Tripterygium wilfordii HOM05D000424 ORTHO05D009589 3.2e-08 63.2 48 66.7
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 4.2e-08 62.8 183 25.1
Sabra06G0193600 Salix brachista HOM05D000424 ORTHO05D009589 4.2e-08 62.8 142 32.4
TWI63G0620 Tripterygium wilfordii HOM05D000424 ORTHO05D009589 4.2e-08 62.8 48 64.6
CiPaw.08G015000 Carya illinoinensis HOM05D000424 ORTHO05D009589 7.1e-08 62.0 48 64.6
MD08G1137400 Malus domestica HOM05D000424 ORTHO05D009589 7.1e-08 62.0 50 60.0
Nitab4.5_0003976g0030 Nicotiana tabacum HOM05D000424 ORTHO05D009589 7.1e-08 62.0 104 39.4
FAN27G1694 Fragaria x ananassa HOM05D000424 ORTHO05D009589 9.3e-08 61.6 50 62.0
Manes.15G186000 Manihot esculenta HOM05D007173 ORTHO05D009151 9.3e-08 61.6 139 28.8
Potri.006G247400 Populus trichocarpa HOM05D000424 ORTHO05D009589 9.3e-08 61.6 142 32.4
CAN.G199.52 Capsicum annuum HOM05D000424 ORTHO05D009589 1.2e-07 61.2 52 57.7
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 1.2e-07 61.2 212 25.0
Atru.chr7.2333 Acer truncatum HOM05D000424 ORTHO05D009589 1.6e-07 60.8 49 61.2
COL.COLO4_24047 Corchorus olitorius HOM05D000424 ORTHO05D009589 1.6e-07 60.8 122 33.6
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 1.6e-07 60.8 117 32.5
FAN24G1578 Fragaria x ananassa HOM05D000424 ORTHO05D009589 2.1e-07 60.5 50 62.0
Thecc.09G145100 Theobroma cacao HOM05D000424 ORTHO05D009589 2.1e-07 60.5 47 66.0
unitig_46.g18532 Utricularia gibba HOM05D007173 ORTHO05D009589 2.1e-07 60.5 91 37.4
Nn2g11854 Nelumbo nucifera HOM05D000424 ORTHO05D009589 4.6e-07 59.3 50 58.0
PGSC0003DMG400026082 Solanum tuberosum HOM05D000424 ORTHO05D009589 4.6e-07 59.3 52 53.8
Sopen06g024170 Solanum pennellii HOM05D000424 ORTHO05D009589 6.0e-07 58.9 48 56.2
Glyma.17G205100 Glycine max HOM05D000424 ORTHO05D009589 7.9e-07 58.5 144 32.6
Peaxi162Scf00275g00114 Petunia axillaris HOM05D000424 ORTHO05D009589 7.9e-07 58.5 48 58.3
RcHm_v2.0_Chr6g0312841 Rosa chinensis HOM05D000424 ORTHO05D009589 7.9e-07 58.5 50 60.0
TAR625G1346 Trochodendron aralioides HOM05D000424 ORTHO05D009589 7.9e-07 58.5 50 58.0
Aqoxy7G01896 Aquilegia oxysepala HOM05D000424 ORTHO05D009589 1.0e-06 58.2 49 57.1
Solyc06g065510.4 Solanum lycopersicum HOM05D000424 ORTHO05D009589 1.0e-06 58.2 48 54.2
Cpa.g.sc22.61 Carica papaya HOM05D000424 ORTHO05D009589 1.3e-06 57.8 83 41.0
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 1.3e-06 57.8 185 23.8
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.8e-06 57.4 209 25.4
MSTRG.16695 Avicennia marina HOM05D000424 ORTHO05D009589 3.9e-06 56.2 67 46.3
Gohir.D06G047551 Gossypium hirsutum HOM05D000424 ORTHO05D009589 5.1e-06 55.8 54 53.7
Oeu032728.1 Olea europaea HOM05D000424 ORTHO05D009589 5.1e-06 55.8 50 56.0
SalBow4G1058 Salvia bowleyana HOM05D000424 ORTHO05D009589 6.7e-06 55.5 50 54.0
Glyma.14G044600 Glycine max HOM05D007173 ORTHO05D009151 8.7e-06 55.1 182 24.7


User provided reference genes

Program Settings