Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 3.1e-108 395.2 207 100.0
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.7e-101 371.7 207 93.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.1e-100 368.6 207 92.3
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 6.9e-100 367.5 207 92.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 3.8e-98 361.7 207 90.3
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 7.2e-89 330.9 207 81.2
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.1e-86 323.6 207 80.2
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.1e-84 315.1 205 81.5
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 5.3e-84 314.7 194 83.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.2e-83 313.5 203 81.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.6e-83 312.4 203 80.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.4e-83 312.0 193 82.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 5.9e-83 311.2 203 80.3
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.0e-82 310.5 207 77.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-82 310.1 193 82.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.2e-82 309.3 202 80.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.2e-82 309.3 203 77.8
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.9e-82 308.9 204 78.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.0e-82 308.1 193 81.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 5.0e-82 308.1 196 82.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.0e-82 308.1 201 78.6
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.5e-82 307.8 205 79.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 6.5e-82 307.8 205 78.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 8.5e-82 307.4 205 78.5
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.1e-81 307.0 208 77.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.2e-81 305.4 198 80.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.2e-81 305.1 209 77.0
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.5e-81 304.7 201 77.6
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.5e-81 304.7 202 78.2
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.5e-81 304.7 206 76.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.2e-80 303.5 203 76.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.2e-80 303.5 199 78.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.7e-80 302.4 203 76.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.7e-80 301.6 206 74.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.7e-80 301.6 207 74.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 4.7e-80 301.6 207 76.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 6.1e-80 301.2 201 78.1
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 7.9e-80 300.8 208 74.0
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.0e-79 300.4 207 77.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.9e-79 298.5 207 76.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 5.1e-79 298.1 182 83.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 6.7e-79 297.7 205 73.2
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 8.8e-79 297.4 186 79.0
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.8e-79 297.4 206 77.2
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-78 297.0 201 75.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.5e-78 296.6 203 76.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.0e-78 296.2 203 74.9
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.0e-78 296.2 198 77.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.4e-78 295.0 207 75.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 7.4e-78 294.3 203 74.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.4e-78 294.3 208 74.0
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-77 293.5 204 75.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-77 293.5 204 75.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.8e-77 291.6 193 76.2
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.4e-76 290.0 190 76.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.4e-76 290.0 195 74.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.8e-76 289.7 193 75.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.4e-76 289.3 218 71.6
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-76 288.9 191 76.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.5e-75 286.6 201 75.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.0e-75 286.2 207 73.9
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.6e-75 285.8 180 75.6
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-75 285.4 207 73.9
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.9e-75 284.6 205 71.2
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.2e-74 282.7 205 70.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.5e-74 281.2 200 73.5
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.1e-73 280.4 202 70.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 9.4e-73 277.3 222 69.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.2e-72 276.9 197 72.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.1e-72 274.6 205 69.3
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.0e-72 274.2 201 71.6
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.0e-71 273.9 205 68.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.0e-71 273.9 201 71.6
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.4e-71 273.5 198 72.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.4e-71 273.5 203 71.9
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.3e-71 272.7 205 67.8
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.0e-71 272.3 205 72.2
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.9e-71 271.9 201 71.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.2e-71 271.6 158 84.2
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 5.2e-71 271.6 197 72.6
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 5.2e-71 271.6 205 70.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 5.2e-71 271.6 205 70.2
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.7e-71 271.2 172 78.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.8e-71 270.8 201 71.1
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 8.8e-71 270.8 180 73.9
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.1e-70 270.4 201 71.6
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.1e-70 270.4 162 82.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.0e-70 269.6 202 70.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.0e-70 269.6 287 56.1
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.6e-70 269.2 195 72.3
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.3e-70 268.9 194 71.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.7e-70 268.1 205 69.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.7e-70 268.1 205 68.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 200 68.5
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.8e-69 265.8 195 72.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.7e-69 265.4 203 69.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.7e-69 265.4 202 69.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-68 263.8 202 67.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.4e-68 263.5 204 66.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-68 263.1 198 68.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.8e-68 263.1 202 66.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-68 263.1 195 72.3
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.1e-68 262.3 174 74.7
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 3.1e-68 262.3 197 67.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.1e-68 261.9 198 69.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 5.3e-68 261.5 211 67.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.1e-68 260.8 191 70.2
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.2e-67 260.4 211 66.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.6e-67 260.0 200 66.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 4.5e-67 258.5 197 68.0
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.9e-67 258.1 174 73.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-66 256.5 189 70.9
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.8e-66 255.4 200 68.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.5e-66 254.6 198 65.7
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-65 253.4 166 77.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.6e-64 248.8 200 65.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.7e-64 248.4 201 64.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.8e-63 246.5 156 82.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.7e-61 238.8 200 64.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.4e-60 236.9 200 66.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.3e-60 235.0 170 70.0
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 7.7e-59 231.1 204 63.7
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.1e-57 227.3 165 72.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.2e-54 217.2 128 83.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.4e-54 215.7 194 58.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.3e-53 211.5 123 83.7
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.0e-51 206.5 124 80.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.3e-50 203.0 154 70.1
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.8e-48 196.1 178 59.0
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.4e-46 189.1 207 53.1
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.7e-45 185.7 176 56.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.7e-45 185.7 181 59.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.3e-45 184.9 150 60.7
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.5e-43 178.7 107 83.2
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.3e-42 177.2 118 71.2
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.3e-42 176.4 201 53.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.3e-42 176.4 163 58.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 5.6e-41 171.8 103 82.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 5.8e-38 161.8 93 81.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 149 53.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 6.0e-35 151.8 164 48.8
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-33 147.5 173 50.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.9e-29 132.1 104 64.4
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.1e-20 102.4 108 55.6
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-19 100.9 214 36.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 6.0e-19 98.6 72 66.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 6.6e-18 95.1 154 39.0
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.3e-17 91.7 59 69.5
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 9.5e-17 91.3 72 62.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.4e-15 87.4 57 70.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.3e-13 80.9 191 33.5
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.4e-12 76.6 81 54.3
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 4.2e-12 75.9 62 66.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.1e-11 73.6 56 67.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.0e-10 69.7 40 82.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 5.8e-06 55.5 60 50.0


User provided reference genes

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