Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 2367.4 1201 100.0
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 2261.9 1205 95.5
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 2212.6 1206 93.2
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1951.4 1212 80.9
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1951.4 1212 80.9
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1933.7 1211 80.6
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1921.4 1032 95.5
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1920.2 1213 80.0
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1912.9 1213 80.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1904.4 1302 74.6
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1897.9 1211 78.9
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1894.0 1210 80.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1892.1 1213 79.4
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1890.9 1212 79.3
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1889.4 1212 79.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1886.7 1212 78.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1873.6 1228 77.7
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1228 77.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1209 77.8
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1211 78.0
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1868.6 1208 78.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1864.4 1228 77.3
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1863.2 1208 77.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1861.7 1211 77.8
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1859.0 1212 78.3
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1853.2 1216 77.5
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1852.4 1212 78.1
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1850.1 1205 76.9
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1849.7 1209 77.6
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1848.6 1205 77.3
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1847.8 1203 77.9
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1839.3 1213 76.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1836.6 1211 77.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1835.5 1212 77.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1828.1 1210 77.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1826.6 1205 76.6
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1826.2 1208 76.7
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1821.6 1214 75.6
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1820.4 1136 80.7
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1816.2 1208 76.3
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1813.1 1213 75.4
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1209 76.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1809.3 1289 72.4
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1809.3 1289 72.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1808.5 1205 76.2
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1802.7 1212 76.1
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1802.7 1206 75.9
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1795.0 1200 75.8
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1794.6 1202 75.7
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1791.5 1200 75.7
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1791.2 1200 75.8
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1790.4 1202 75.5
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1790.4 1200 75.6
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1213 74.3
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1203 75.6
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1202 75.4
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1787.7 1291 72.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1785.0 1221 74.8
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1783.5 1219 74.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1215 75.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1778.5 1203 75.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1775.8 1203 74.1
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1203 74.6
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1770.7 1204 74.4
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1203 74.4
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1203 74.5
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1759.2 1214 73.4
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1200 73.8
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1748.0 1214 73.4
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1103 80.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1203 73.1
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1204 73.7
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1741.9 1204 73.3
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1207 74.2
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1737.6 1236 72.6
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1737.2 1204 73.4
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1736.1 1210 73.0
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1736.1 1213 73.6
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1354 67.9
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1719.1 1208 72.8
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1704.1 1221 71.1
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1672.5 1206 71.6
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1667.9 1202 72.0
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1652.9 1197 71.0
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1643.2 1218 70.4
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1633.6 1219 68.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1589.3 1021 78.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1563.5 1201 68.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1560.0 1047 75.7
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1557.3 1047 75.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1540.4 1206 65.8
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1528.8 1208 64.3
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1516.5 1217 63.9
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1513.8 1030 74.6
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1511.9 983 78.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1493.4 982 77.2
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1434.9 987 73.9
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1391.7 1060 67.5
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1351.3 900 76.0
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1349.3 836 81.6
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1334.7 933 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1318.9 1227 57.0
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1245.0 1238 54.0
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1237.2 875 70.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1181.8 911 66.7
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1098.6 1231 50.4
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1085.9 1233 50.0
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.0e-272 942.6 1201 43.9
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.3e-270 937.2 1329 43.5
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.9e-252 875.2 1231 43.2
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.0e-247 860.1 527 83.5
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.0e-228 795.4 1145 42.4
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 6.9e-200 702.2 424 82.5
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.7e-156 556.6 484 62.4
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 5.7e-154 549.7 314 86.0
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 7.4e-154 549.3 432 66.7
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 6.3e-153 546.2 332 81.0
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.5e-149 534.3 743 43.7
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.7e-129 468.4 331 70.4
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 5.4e-128 463.4 350 68.6
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.2e-122 445.7 292 76.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 2.3e-115 421.4 328 68.6
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.6e-101 373.6 361 54.8
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.7e-94 352.1 313 60.1
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 4.2e-88 330.9 393 49.9
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.1e-88 330.1 256 67.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.7e-86 325.5 290 54.5
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 6.2e-60 237.3 267 50.6
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 2.5e-56 225.3 159 69.8
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 9.7e-53 213.4 116 87.1
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.0e-49 203.4 140 74.3
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.6e-47 194.9 138 66.7
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 9.7e-45 186.8 117 73.5
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.1e-43 181.4 732 25.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.1e-43 180.3 164 56.7
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.6e-39 169.5 208 49.5
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-38 165.6 271 40.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.8e-36 157.9 195 49.2
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.5e-32 145.6 86 84.9
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.7e-31 141.4 160 51.9
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.1e-27 127.1 165 45.5
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.1e-19 100.5 71 63.4
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 4.5e-18 98.2 59 74.6
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 2.2e-17 95.9 62 75.8
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.0e-15 87.4 241 31.5
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 2.2e-12 79.3 47 72.3
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 3.7e-12 78.6 76 59.2
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 4.9e-12 78.2 74 66.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 4.9e-12 78.2 74 66.2
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.1e-11 77.0 46 65.2
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.8e-11 76.3 65 61.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 5.0e-09 68.2 38 78.9
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 8.6e-09 67.4 55 60.0
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.9e-08 66.2 58 63.8
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.8e-07 62.4 99 40.4
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 6.8e-06 57.8 48 70.8


User provided reference genes

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