Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 0.0e+00 1122.5 549 100.0
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 2.0e-287 991.9 548 88.5
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 3.3e-282 974.5 548 87.8
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 5.6e-266 920.6 547 82.4
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 9.4e-205 717.2 515 66.0
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.2e-204 716.8 515 66.0
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 2.1e-204 716.1 524 66.4
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 2.3e-203 712.6 514 67.1
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 3.0e-203 712.2 520 65.6
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 3.0e-203 712.2 535 65.2
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 8.8e-203 710.7 525 64.6
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 8.8e-203 710.7 519 64.9
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 8.8e-203 710.7 521 65.3
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 8.8e-203 710.7 523 65.4
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 9.7e-202 707.2 521 64.9
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 4.8e-201 704.9 511 66.9
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 1.1e-200 703.7 515 65.0
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.1e-200 703.7 509 66.4
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 2.4e-200 702.6 522 65.3
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 3.1e-200 702.2 506 66.2
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 3.1e-200 702.2 515 65.6
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 3.5e-199 698.7 525 64.2
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 5.9e-199 698.0 521 64.5
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 1.7e-198 696.4 515 65.6
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 3.8e-198 695.3 515 65.8
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 3.8e-198 695.3 524 63.9
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 8.5e-198 694.1 544 62.9
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 8.5e-198 694.1 514 64.6
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.1e-197 693.7 511 65.4
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 1.5e-197 693.3 515 64.1
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 1.9e-197 693.0 512 65.0
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 7.2e-197 691.0 506 65.8
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 2.1e-196 689.5 515 63.9
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 2.1e-196 689.5 524 63.4
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 4.7e-196 688.3 507 65.1
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 8.0e-196 687.6 513 64.7
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 4.0e-195 685.3 531 62.1
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 4.0e-195 685.3 510 65.1
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 5.2e-195 684.9 524 63.2
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 6.8e-195 684.5 553 60.6
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 8.8e-195 684.1 520 64.2
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.5e-194 683.3 514 64.2
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 2.0e-194 682.9 503 65.0
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 2.0e-194 682.9 520 64.8
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 2.6e-194 682.6 521 62.8
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 3.4e-194 682.2 515 62.7
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 3.7e-193 678.7 509 63.9
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 4.8e-193 678.3 509 63.5
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 6.3e-193 677.9 523 62.9
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 6.3e-193 677.9 516 63.8
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 2.4e-192 676.0 524 62.2
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.4e-192 676.0 523 62.7
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 3.1e-192 675.6 506 64.4
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 4.1e-192 675.2 509 63.1
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 1.2e-191 673.7 521 62.2
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 1.2e-191 673.7 515 62.3
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 1.2e-191 673.7 506 63.4
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 2.0e-191 672.9 541 61.4
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.5e-191 672.2 515 62.3
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 4.5e-191 671.8 513 63.2
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 5.9e-191 671.4 516 63.0
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 7.7e-191 671.0 509 63.1
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 2.3e-190 669.5 549 60.7
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 1.5e-189 666.8 515 61.7
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 1.6e-188 663.3 507 61.7
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 3.6e-188 662.1 524 61.1
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 4.7e-188 661.8 513 62.8
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 1.4e-187 660.2 509 63.1
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.0e-187 658.7 524 60.9
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 8.9e-187 657.5 507 61.5
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 1.5e-186 656.8 508 63.2
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 2.0e-186 656.4 538 60.8
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.6e-186 656.0 523 61.2
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 7.5e-186 654.4 523 61.0
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 2.2e-185 652.9 502 63.9
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 2.2e-185 652.9 506 62.6
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.8e-185 652.5 517 60.9
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 3.7e-185 652.1 483 63.4
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 3.1e-184 649.0 515 61.6
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 2.0e-183 646.4 501 62.1
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 4.5e-183 645.2 513 61.8
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 4.5e-183 645.2 515 61.6
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 7.8e-183 644.4 498 63.3
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 1.7e-182 643.3 515 61.4
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 2.3e-182 642.9 515 61.2
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 2.3e-182 642.9 515 61.2
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 2.8e-180 636.0 488 62.9
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.3e-177 627.1 548 57.8
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 8.3e-177 624.4 506 60.5
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 5.4e-176 621.7 488 60.7
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 1.6e-175 620.2 562 56.8
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 4.6e-175 618.6 503 59.0
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 3.3e-173 612.5 523 58.5
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 9.8e-170 600.9 521 58.2
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 1.4e-160 570.5 512 57.4
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 2.5e-149 533.1 511 50.5
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 3.2e-144 516.2 407 62.4
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 3.9e-134 482.6 400 60.0
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 3.9e-126 456.1 363 62.0
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 2.4e-123 446.8 362 59.7
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 7.1e-120 435.3 395 55.4
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.9e-104 384.0 520 43.1
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.9e-102 376.3 299 59.9
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.8e-100 369.4 301 58.1
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 5.2e-86 322.8 234 61.5
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 1.5e-77 294.7 214 60.3
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 1.3e-68 265.0 189 66.1
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.5e-64 251.5 179 65.9
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 9.8e-53 212.2 143 67.1
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.2e-50 205.3 148 59.5
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 5.6e-16 90.1 103 48.5
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 2.9e-12 77.8 56 60.7
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 5.5e-11 73.6 78 48.7
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 3.9e-09 67.4 104 38.5


User provided reference genes

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