Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.5e-97 359.8 211 100.0
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 4.1e-92 341.7 212 95.3
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 5.4e-92 341.3 212 95.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 6.6e-82 307.8 211 77.3
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.1e-67 259.6 206 72.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 6.2e-64 248.1 206 72.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.4e-62 242.3 206 63.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.5e-62 241.9 206 62.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 9.9e-62 240.7 208 61.5
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.2e-61 239.6 208 63.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.9e-61 239.2 206 62.6
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.9e-61 239.2 208 63.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 3.8e-61 238.8 199 64.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.9e-60 236.5 208 61.1
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 4.2e-60 235.3 198 61.6
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.4e-60 235.0 208 62.5
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.8e-58 229.9 208 57.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.3e-58 229.6 206 60.2
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 3.0e-58 229.2 198 62.1
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 8.7e-58 227.6 198 61.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.5e-57 226.1 212 59.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.5e-57 226.1 212 59.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 7.4e-57 224.6 209 58.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 7.4e-57 224.6 206 58.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.1e-56 223.0 203 58.6
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 4.8e-56 221.9 197 60.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 8.1e-56 221.1 198 59.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-55 220.3 207 58.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 4.0e-55 218.8 208 56.7
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.3e-55 218.4 207 57.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 6.9e-55 218.0 205 58.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 9.0e-55 217.6 205 58.0
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.5e-54 216.9 198 59.1
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.6e-54 216.1 207 56.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.4e-54 215.7 189 60.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.3e-53 213.8 199 67.3
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.2e-53 213.0 207 55.6
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.2e-53 213.0 196 59.2
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-52 210.7 203 55.2
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.6e-51 206.8 198 54.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.7e-51 206.1 179 61.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 2.7e-51 206.1 196 56.1
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.3e-50 203.8 202 54.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.3e-50 203.8 189 56.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.3e-50 203.0 206 53.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 3.9e-50 202.2 206 59.7
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 6.7e-50 201.4 204 52.0
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 6.7e-50 201.4 201 54.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-49 200.7 188 55.9
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.5e-49 200.3 197 56.9
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.9e-49 199.9 196 54.6
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.9e-49 199.9 188 55.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.5e-49 199.5 190 55.3
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.6e-48 196.8 200 54.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.6e-48 196.8 199 52.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.1e-48 196.4 201 53.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.8e-48 196.1 206 51.9
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.2e-48 194.5 190 53.7
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.1e-47 194.1 182 59.3
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.1e-47 192.6 201 59.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 9.0e-47 191.0 198 52.0
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.2e-46 190.7 201 52.2
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 4.5e-46 188.7 201 53.7
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 5.8e-46 188.3 212 50.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.0e-45 187.6 206 52.4
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.0e-45 187.6 197 47.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.7e-45 186.8 198 49.0
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 2.2e-45 186.4 204 48.5
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 5.0e-45 185.3 197 51.3
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 6.5e-45 184.9 200 49.0
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.9e-44 183.3 203 52.2
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 7.1e-44 181.4 198 52.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 1.6e-43 180.3 197 46.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.5e-43 179.1 197 56.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 4.6e-43 178.7 198 48.5
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 6.1e-43 178.3 204 50.5
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 7.9e-43 177.9 135 65.2
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 7.9e-43 177.9 205 54.6
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.3e-42 177.2 135 65.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.3e-42 177.2 202 48.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.7e-42 174.9 207 48.3
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 6.7e-42 174.9 197 48.7
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 6.7e-42 174.9 197 48.7
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.1e-41 174.1 197 48.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.5e-41 173.7 169 56.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-41 173.3 137 63.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.9e-41 173.3 198 47.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.5e-41 172.9 194 51.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.3e-41 172.2 197 47.7
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.2e-40 169.9 193 48.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.7e-40 169.1 200 49.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 4.8e-40 168.7 197 47.2
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.1e-39 166.0 188 47.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.5e-38 163.7 197 46.2
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.0e-38 163.3 188 47.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.6e-38 162.9 197 46.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 3.4e-38 162.5 199 48.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 3.4e-38 162.5 199 48.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 4.5e-38 162.2 198 45.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 7.7e-38 161.4 197 46.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.7e-37 160.2 197 44.2
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-36 157.5 216 43.1
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-36 157.5 198 47.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-36 156.8 216 43.1
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 3.2e-36 156.0 179 48.0
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.2e-36 156.0 199 47.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.6e-35 153.7 199 46.7
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.6e-35 153.7 204 41.7
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 8.8e-34 147.9 198 43.9
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.5e-33 147.1 199 46.2
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.4e-30 136.0 218 41.3
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.4e-28 130.6 160 45.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 7.9e-27 124.8 168 45.8
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.8e-26 123.6 179 41.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.0e-26 122.9 118 57.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-25 120.9 196 37.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-25 120.2 196 36.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-25 120.2 196 36.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.6e-25 119.8 172 45.3
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.3e-25 119.4 85 69.4
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.3e-24 117.5 207 36.2
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-24 116.7 196 36.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.5e-22 109.0 120 52.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.9e-22 108.6 209 34.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.7e-21 107.1 200 34.5
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.2e-21 106.7 200 36.0
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 8.5e-21 104.8 206 35.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 4.2e-20 102.4 72 76.4
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 6.7e-18 95.1 160 37.5
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.5e-17 94.0 141 35.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.3e-17 92.8 160 31.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 4.4e-17 92.4 198 34.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.7e-16 89.4 113 40.7
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.4e-15 87.4 143 34.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 5.3e-15 85.5 153 37.9
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.2e-11 74.3 95 36.8
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 2.1e-11 73.6 133 30.8
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 2.7e-11 73.2 94 43.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 9.8e-09 64.7 50 56.0
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 5.9e-06 55.5 114 31.6


User provided reference genes

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