Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.9e-98 362.5 181 100.0
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 8.2e-97 357.1 181 98.3
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 5.3e-96 354.4 181 97.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.2e-93 345.1 181 93.9
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.0e-91 340.1 181 92.3
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.1e-88 328.6 181 89.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 89.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 9.0e-88 327.0 179 89.4
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.4e-87 325.1 179 88.8
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.4e-87 325.1 181 89.5
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-86 323.2 181 87.8
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.3e-86 323.2 181 86.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.7e-86 322.8 181 87.8
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.2e-86 322.4 179 88.3
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 86.2
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.9e-86 322.0 179 88.8
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 3.8e-86 321.6 181 86.7
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.5e-86 320.9 179 88.3
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 8.5e-86 320.5 179 87.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 8.5e-86 320.5 179 87.7
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.5e-86 320.5 181 87.3
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 84.5
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.5e-85 318.9 179 86.6
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.5e-85 318.9 179 86.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.5e-85 318.9 181 86.2
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 3.2e-85 318.5 182 86.3
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 87.3
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.2e-85 318.2 179 87.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.5e-85 317.8 179 85.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 5.5e-85 317.8 181 86.2
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 9.4e-85 317.0 180 86.7
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.2e-84 316.6 179 88.3
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 3.6e-84 315.1 179 86.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 85.1
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.3e-83 312.4 179 83.8
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.3e-83 312.4 181 82.9
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.3e-83 312.4 180 87.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.0e-83 312.0 179 82.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.0e-83 312.0 176 86.4
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.0e-83 312.0 179 84.9
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 3.0e-83 312.0 168 90.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.1e-83 311.2 167 91.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 84.0
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.8e-83 310.5 179 82.1
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.8e-83 310.5 179 83.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.5e-82 309.7 180 86.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.3e-82 308.5 177 85.9
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 82.9
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.3e-82 308.5 180 86.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 86.9
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.3e-82 308.5 182 82.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 85.8
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 83.4
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 85.8
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 85.8
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 81.8
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.7e-81 306.2 176 85.2
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.7e-81 306.2 180 85.6
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.2e-81 305.8 179 83.2
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 82.9
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.7e-81 305.1 182 83.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 4.8e-81 304.7 178 84.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 177 83.1
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 81.2
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 1.8e-80 302.8 203 75.9
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.1e-80 302.0 180 80.0
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 84.4
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 81.8
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.1e-80 302.0 179 81.6
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 5.3e-80 301.2 179 83.8
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.2e-79 300.1 183 82.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 170 85.3
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 78.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 80.7
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 80.7
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 83.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 79.6
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.5e-79 298.1 177 84.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.5e-79 298.1 172 85.5
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 4.5e-79 298.1 179 83.2
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.9e-79 297.7 170 85.3
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.9e-79 297.7 170 84.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.0e-78 297.0 172 84.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 1.0e-78 297.0 170 83.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 78.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 2.9e-78 295.4 176 81.2
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 3.8e-78 295.0 177 80.8
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 3.8e-78 295.0 181 78.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 5.0e-78 294.7 176 80.1
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 5.0e-78 294.7 176 81.2
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.0e-78 294.7 179 81.0
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.5e-78 293.9 169 85.8
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.1e-77 293.5 182 80.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.1e-77 293.5 182 80.8
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 78.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.4e-77 293.1 200 75.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.4e-77 293.1 169 83.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.9e-77 292.7 176 80.1
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.5e-77 292.4 176 80.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.5e-77 292.4 176 80.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 3.2e-77 292.0 176 80.7
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.2e-77 290.8 168 85.1
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.1e-76 289.3 173 82.7
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.6e-76 288.5 168 82.7
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 6.1e-76 287.7 182 77.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.9e-76 287.3 181 80.1
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 7.9e-76 287.3 168 85.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-75 286.6 177 79.1
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-75 286.6 177 79.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-75 286.6 177 79.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.8e-75 286.2 179 78.2
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.8e-75 286.2 168 83.3
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 3.9e-75 285.0 177 78.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 5.1e-75 284.6 182 76.9
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 5.1e-75 284.6 168 81.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.5e-74 283.1 177 79.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.0e-74 282.7 171 79.5
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.3e-74 282.0 161 86.3
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.3e-73 280.0 179 79.9
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.8e-73 278.9 172 78.5
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 3.7e-73 278.5 177 79.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 6.3e-73 277.7 176 79.0
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 4.1e-72 275.0 169 79.3
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.5e-70 267.7 150 88.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.4e-69 266.5 259 57.5
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.8e-67 259.6 166 73.5
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.3e-67 259.2 182 72.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.4e-66 255.0 179 69.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.0e-63 246.1 168 69.6
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 3.5e-63 245.4 148 82.4
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.4e-59 233.4 172 65.1
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.2e-59 231.5 169 64.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.3e-58 228.8 179 68.2
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.3e-57 226.9 177 62.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 2.0e-50 203.0 173 57.8
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 7.0e-48 194.5 172 62.8
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-47 193.7 134 72.4
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.4e-40 170.2 100 85.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.8e-36 156.0 116 69.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.1e-36 154.8 102 77.5
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.9e-32 143.3 169 42.0
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.9e-32 143.3 80 87.5
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.9e-30 135.6 179 40.2
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.6e-26 122.9 69 84.1
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 9.8e-26 120.9 75 81.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 9.8e-26 120.9 75 81.3
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.6e-23 112.1 57 89.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 4.6e-23 112.1 100 60.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.6e-20 102.4 54 88.9
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.1e-19 99.4 83 65.1
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 3.1e-19 99.4 62 75.8
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.0e-18 96.7 209 37.3
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.2e-17 93.2 161 36.6
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.9e-17 92.8 165 35.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-14 81.3 90 50.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-11 73.9 88 48.9
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-11 72.8 37 91.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 5.8e-10 68.6 51 66.7
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 7.6e-10 68.2 45 68.9
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 9.9e-10 67.8 63 57.1
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 50 66.0
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-09 65.1 38 84.2
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 42 73.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 42 69.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.0e-06 57.8 38 71.1
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.0e-06 57.8 38 71.1


User provided reference genes

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