Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.9e-57 224.9 108 100.0
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 6.1e-23 110.9 58 93.1
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 5.3e-19 97.8 52 90.4
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 8.5e-17 90.5 52 80.8
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.6e-15 86.3 52 75.0
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.6e-15 86.3 52 78.8
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 1.4e-14 83.2 58 69.0
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 2.3e-14 82.4 54 75.9
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 3.9e-14 81.6 52 73.1
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 5.2e-14 81.3 52 73.1
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 2.6e-13 79.0 52 69.2
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 4.4e-13 78.2 52 71.2
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 4.4e-13 78.2 54 72.2
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 5.7e-13 77.8 52 75.0
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 7.4e-13 77.4 52 67.3
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 9.7e-13 77.0 55 69.1
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 9.7e-13 77.0 48 75.0
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.3e-12 76.6 53 69.8
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.3e-12 76.6 52 69.2
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.2e-12 75.9 52 73.1
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.2e-12 75.9 52 73.1
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 2.8e-12 75.5 52 69.2
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 4.8e-12 74.7 52 67.3
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 4.8e-12 74.7 53 60.4
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 6.3e-12 74.3 43 79.1
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 8.2e-12 73.9 55 65.5
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 8.2e-12 73.9 52 65.4
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.1e-11 73.6 55 65.5
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 1.4e-11 73.2 55 65.5
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 1.4e-11 73.2 52 67.3
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.4e-11 72.4 52 61.5
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 2.4e-11 72.4 43 74.4
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.4e-11 72.4 43 74.4
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.1e-11 72.0 52 67.3
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.1e-11 72.0 51 68.6
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 4.1e-11 71.6 42 76.2
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 7.0e-11 70.9 54 64.8
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 9.1e-11 70.5 44 77.3
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.2e-10 70.1 54 64.8
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 1.6e-10 69.7 53 64.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 2.0e-10 69.3 52 67.3
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 2.0e-10 69.3 52 67.3
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 2.0e-10 69.3 53 67.9
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 3.5e-10 68.6 42 71.4
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 3.5e-10 68.6 50 64.0
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 1.0e-09 67.0 53 62.3
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 1.0e-09 67.0 53 64.2
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 1.0e-09 67.0 49 63.3
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 1.3e-09 66.6 43 69.8
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 2.2e-09 65.9 47 61.7
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 3.8e-09 65.1 86 47.7
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 6.5e-09 64.3 61 57.4
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 1.5e-08 63.2 53 62.3
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 1.9e-08 62.8 46 58.7
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 2.5e-08 62.4 60 56.7
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 2.5e-08 62.4 60 56.7
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 2.5e-08 62.4 44 68.2
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 3.2e-08 62.0 48 62.5
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 7.2e-08 60.8 49 61.2
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 9.4e-08 60.5 49 59.2
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.2e-07 60.1 49 61.2
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 2.7e-07 58.9 40 65.0
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 2.7e-07 58.9 40 65.0
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 2.7e-07 58.9 40 65.0
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 2.7e-07 58.9 40 65.0
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 2.7e-07 58.9 39 69.2
Mapoly0056s0140 Marchantia polymorpha HOM05D007824 ORTHO05D009875 3.6e-07 58.5 49 57.1
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 3.6e-07 58.5 45 64.4
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 4.7e-07 58.2 40 65.0
CsaV3_4G036330 Cucumis sativus L. HOM05D007824 ORTHO05D009875 1.0e-06 57.0 32 87.5
Carub.0006s2284 Capsella rubella HOM05D007824 ORTHO05D009875 4.0e-06 55.1 39 69.2
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 4.0e-06 55.1 44 61.4
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.2e-06 54.7 36 75.0


User provided reference genes

Program Settings