Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 3.6e-171 604.7 293 100.0
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.1e-116 423.7 292 78.8
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 5.9e-113 411.4 296 76.4
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 8.4e-27 125.2 317 34.7
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.5e-23 113.6 318 35.2
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 3.3e-23 113.2 327 33.6
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 3.1e-21 106.7 315 34.9
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 6.9e-21 105.5 320 32.8
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.6e-20 103.6 306 34.0
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.6e-20 103.6 330 32.7
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 3.4e-20 103.2 311 35.4
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.4e-20 103.2 315 33.0
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.7e-19 100.9 327 33.3
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 2.9e-19 100.1 317 32.8
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 3.8e-19 99.8 334 32.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-18 98.2 358 31.6
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.1e-18 98.2 330 33.0
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.4e-18 97.8 283 35.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.4e-18 97.8 316 32.0
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.9e-18 97.4 307 32.9
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.2e-18 96.7 336 31.8
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 4.2e-18 96.3 336 32.1
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 5.5e-18 95.9 347 31.7
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 9.4e-18 95.1 277 35.0
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 9.4e-18 95.1 321 34.0
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 2.1e-17 94.0 313 32.6
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.1e-17 94.0 346 32.7
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 3.6e-17 93.2 355 31.5
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 3.6e-17 93.2 305 30.5
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.8e-16 90.9 333 32.1
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.3e-16 90.5 341 31.7
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 6.7e-16 89.0 334 31.4
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 8.8e-16 88.6 323 32.2
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.8e-16 88.6 315 32.1
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.1e-15 88.2 330 30.0
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.3e-15 86.3 338 30.2
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.3e-15 86.3 325 29.2
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 7.4e-15 85.5 349 30.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.3e-14 84.7 290 33.8
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.2e-14 84.0 225 34.7
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 8.2e-14 82.0 320 32.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.1e-13 81.6 330 30.6
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.4e-13 81.3 309 30.4
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 9.1e-13 78.6 157 40.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.5e-12 77.8 327 30.6
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.0e-12 77.4 328 28.7
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 3.4e-12 76.6 199 33.2
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 3.4e-12 76.6 310 32.6
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 5.9e-12 75.9 105 48.6
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 7.7e-12 75.5 314 32.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 7.7e-12 75.5 329 30.1
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.3e-11 74.7 320 32.5
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.2e-11 73.9 305 32.5
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 5.0e-11 72.8 313 29.1
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 8.5e-11 72.0 152 39.5
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.1e-10 71.6 323 28.2
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.4e-10 71.2 150 40.7
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.9e-10 70.9 112 50.0
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.2e-10 70.1 179 34.6
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.5e-10 69.3 217 31.8
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 7.2e-10 68.9 80 53.8
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 2.7e-09 67.0 127 39.4
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.6e-09 66.6 176 33.5
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 3.6e-09 66.6 111 44.1
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 6.1e-09 65.9 127 38.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 1.0e-08 65.1 343 28.9
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.0e-08 65.1 287 31.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.4e-08 64.7 94 44.7
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.4e-08 64.7 278 28.4
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.9e-08 63.2 63 57.1
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.1e-08 62.8 53 64.2
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.7e-08 62.4 100 44.0
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 8.8e-08 62.0 81 50.6
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.5e-07 61.2 100 43.0
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 2.0e-07 60.8 94 44.7
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 3.3e-07 60.1 238 29.0
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 3.3e-07 60.1 214 32.2
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 3.3e-07 60.1 139 36.7
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 7.4e-07 58.9 171 33.3
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 7.4e-07 58.9 145 34.5
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.7e-06 57.8 264 27.3
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.7e-06 57.8 264 27.3
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.7e-06 57.8 264 27.3
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.7e-06 57.8 52 61.5
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.7e-06 56.6 140 32.1
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.7e-06 56.6 141 34.0
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 3.7e-06 56.6 95 43.2
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 4.8e-06 56.2 325 27.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.8e-06 56.2 52 59.6
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 6.3e-06 55.8 268 28.0
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 6.3e-06 55.8 47 66.0


User provided reference genes

Program Settings