Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.8e-139 499.2 241 100.0
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 7.8e-95 350.9 241 77.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 7.8e-95 350.9 241 77.2
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 2.3e-94 349.4 241 75.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.1e-93 347.1 241 73.4
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 3.6e-92 342.0 241 74.3
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 3.4e-90 335.5 241 72.6
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 4.4e-90 335.1 241 71.4
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.4e-90 335.1 241 71.4
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 4.4e-90 335.1 241 71.4
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 4.4e-90 335.1 241 71.4
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.8e-90 334.0 241 71.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.3e-89 333.6 241 70.5
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.3e-89 333.6 241 71.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.3e-89 333.6 241 71.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.9e-89 332.4 241 71.8
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 4.9e-89 331.6 241 72.6
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 6.4e-89 331.3 241 71.8
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 8.3e-89 330.9 241 71.4
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.3e-89 330.9 241 71.4
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.3e-89 330.9 241 71.4
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 8.3e-89 330.9 241 71.4
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.1e-88 330.5 241 71.4
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.4e-88 330.1 241 70.5
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.4e-88 330.1 241 71.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.4e-88 329.3 241 71.4
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 3.2e-88 328.9 241 71.0
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 4.1e-88 328.6 241 71.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 5.4e-88 328.2 240 70.8
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 9.2e-88 327.4 241 70.5
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.2e-87 327.0 241 70.1
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.2e-87 327.0 241 70.1
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.2e-87 327.0 241 70.5
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.2e-87 327.0 241 71.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.1e-87 326.2 238 71.4
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.1e-87 326.2 241 70.5
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.1e-87 326.2 237 72.2
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.1e-87 326.2 241 70.1
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.7e-87 325.9 241 71.0
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.7e-87 325.9 241 70.5
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.7e-87 325.9 241 70.1
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.7e-87 325.9 241 70.5
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 3.5e-87 325.5 241 69.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 3.5e-87 325.5 242 69.8
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 4.6e-87 325.1 241 69.7
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 69.7
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 70.1
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 69.7
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 69.7
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 68.9
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 6.0e-87 324.7 241 70.1
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 7.8e-87 324.3 241 70.5
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.0e-86 323.9 241 69.7
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.0e-86 323.9 241 69.3
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.0e-86 323.9 241 69.3
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.0e-86 323.9 241 70.1
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.0e-86 323.9 241 70.1
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.3e-86 323.6 241 70.1
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.3e-86 323.6 241 69.7
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.7e-86 323.2 241 68.9
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.7e-86 323.2 241 70.5
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 2.3e-86 322.8 241 70.1
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 2.3e-86 322.8 241 68.9
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.3e-86 322.8 241 69.3
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 2.3e-86 322.8 241 69.7
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.0e-86 322.4 241 69.7
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 3.0e-86 322.4 241 70.1
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 3.9e-86 322.0 241 69.3
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.9e-86 322.0 241 68.9
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 5.1e-86 321.6 241 69.3
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 5.1e-86 321.6 241 68.5
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 5.1e-86 321.6 241 69.7
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 5.1e-86 321.6 241 69.7
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 5.1e-86 321.6 246 70.3
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 8.6e-86 320.9 241 69.7
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.1e-85 320.5 241 67.6
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.5e-85 320.1 240 69.2
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.5e-85 320.1 241 68.9
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 3.3e-85 318.9 241 68.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 3.3e-85 318.9 241 68.5
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 3.3e-85 318.9 241 68.5
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 4.3e-85 318.5 241 68.0
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 5.6e-85 318.2 241 68.5
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 7.3e-85 317.8 241 68.9
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 9.5e-85 317.4 241 67.6
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 9.5e-85 317.4 241 68.0
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.2e-84 317.0 241 67.6
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.2e-84 317.0 241 67.6
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.2e-84 317.0 241 68.5
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.6e-84 316.6 242 68.2
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.6e-84 316.6 242 68.2
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-84 316.6 241 67.6
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 2.1e-84 316.2 241 68.9
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.8e-84 315.8 241 67.2
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 2.8e-84 315.8 241 67.2
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.8e-84 315.8 241 68.0
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.6e-84 315.5 241 68.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.7e-84 315.1 241 67.2
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 6.2e-84 314.7 241 68.0
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 6.2e-84 314.7 240 67.5
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.1e-83 313.9 241 66.8
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.1e-83 313.9 241 66.8
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.1e-83 313.9 241 66.8
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.1e-83 313.9 241 66.8
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-83 313.9 247 67.2
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.4e-83 313.5 241 68.5
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 2.3e-83 312.8 241 67.6
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.3e-83 312.8 240 69.2
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.1e-83 312.4 255 65.9
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.1e-83 312.4 241 66.4
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.0e-83 312.0 241 66.4
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 6.8e-83 311.2 241 66.0
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 8.9e-83 310.8 260 64.6
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 3.4e-82 308.9 241 66.8
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.9e-81 305.8 235 67.2
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 8.4e-81 304.3 241 66.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.1e-80 303.9 237 67.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 2.4e-80 302.8 260 62.3
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.2e-79 300.4 241 65.1
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.7e-79 299.3 239 64.0
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-75 287.3 223 66.8
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 4.0e-75 285.4 227 64.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 4.4e-74 282.0 221 66.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.1e-72 277.3 235 59.6
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.1e-72 277.3 235 59.6
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 1.4e-72 276.9 241 59.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.2e-72 275.8 241 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.5e-71 272.3 235 58.7
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 7.8e-71 271.2 241 58.5
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.7e-70 270.0 236 62.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.1e-69 267.3 241 60.6
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.9e-69 266.5 240 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.6e-69 265.0 226 59.7
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.8e-68 262.7 241 60.2
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 6.9e-67 258.1 213 63.8
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.2e-66 257.3 208 64.4
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.8e-66 255.0 234 56.4
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 2.9e-65 252.7 203 66.0
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.8e-65 252.3 241 57.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.4e-64 250.4 197 64.5
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.1e-64 248.1 202 63.9
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.2e-63 247.3 241 57.7
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.2e-58 230.7 262 47.7
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 1.4e-56 223.8 241 53.5
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 7.9e-55 218.0 239 47.7
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.8e-54 216.9 241 51.5
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.0e-50 203.4 102 93.1
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.2e-49 199.9 178 60.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 5.5e-48 195.3 98 90.8
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 5.5e-48 195.3 110 87.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.9e-47 191.4 181 55.8
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 5.7e-45 185.3 102 84.3
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 2.0e-42 176.8 221 42.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 3.4e-42 176.0 98 80.6
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 3.2e-40 169.5 229 41.5
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.7e-39 166.4 160 58.1
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.9e-39 164.9 235 43.8
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 3.7e-36 156.0 85 90.6
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.3e-25 120.9 191 45.0
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.2e-20 103.6 68 69.1
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.3e-17 94.4 52 92.3
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.2e-17 93.6 52 88.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 5.5e-16 89.0 49 89.8
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.3e-14 83.6 41 95.1
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 5.7e-13 79.0 45 84.4
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 6.3e-12 75.5 68 57.4
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 6.3e-12 75.5 72 59.7
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 8.2e-12 75.1 41 82.9
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 4.1e-11 72.8 47 74.5
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 9.1e-11 71.6 39 79.5


User provided reference genes

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