Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G014700 Citrullus lanatus HOM05D006334 ORTHO05D008320 3.7e-123 445.3 298 100.0
CsaV3_3G023200 Cucumis sativus L. HOM05D006334 ORTHO05D008320 2.6e-100 369.4 298 87.9
CsaV3_UNG104770 Cucumis sativus L. HOM05D006334 ORTHO05D008320 2.6e-100 369.4 298 87.9
MELO3C018091.2 Cucumis melo HOM05D006334 ORTHO05D008320 3.4e-100 369.0 298 87.9
FAN11G3716 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.5e-89 332.4 293 74.1
Potri.001G418900 Populus trichocarpa HOM05D006334 ORTHO05D008320 3.5e-89 332.4 300 66.3
CiPaw.12G127100 Carya illinoinensis HOM05D006334 ORTHO05D008320 1.8e-88 330.1 299 77.9
FvH4_3g21950 Fragaria vesca HOM05D006334 ORTHO05D008320 1.8e-88 330.1 293 72.0
Prupe.4G205200 Prunus persica HOM05D006334 ORTHO05D008320 8.7e-88 327.8 299 78.6
Haze_09629 Corylus avellana HOM05D006334 ORTHO05D008320 1.3e-86 323.9 299 74.9
FAN25G1013 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.2e-84 317.4 293 73.4
MD11G1224700 Malus domestica HOM05D006334 ORTHO05D008320 1.4e-82 310.5 299 74.6
MD03G1210000 Malus domestica HOM05D006334 ORTHO05D008320 9.3e-82 307.8 299 67.2
AUR62020535 Chenopodium quinoa HOM05D006334 ORTHO05D008320 6.1e-81 305.1 294 70.4
RcHm_v2.0_Chr5g0037801 Rosa chinensis HOM05D006334 ORTHO05D008320 1.0e-80 304.3 295 66.1
TWI38G1766 Tripterygium wilfordii HOM05D006334 ORTHO05D008320 8.7e-80 301.2 301 75.4
Manes.03G123900 Manihot esculenta HOM05D006334 ORTHO05D008320 3.7e-78 295.8 299 69.6
Lsat_1_v5_gn_7_109541 Lactuca sativa HOM05D006334 ORTHO05D008320 6.3e-78 295.0 300 71.3
COL.COLO4_09585 Corchorus olitorius HOM05D006334 ORTHO05D008320 1.1e-77 294.3 299 73.6
CSS0039549 Camellia sinensis var. sinensis HOM05D006334 ORTHO05D008320 2.4e-77 293.1 301 64.8
vmacro09744 Vaccinium macrocarpon HOM05D006334 ORTHO05D008320 9.0e-77 291.2 297 74.7
arahy.Tifrunner.gnm1.ann1.Q0MPW2 Arachis hypogaea HOM05D006334 ORTHO05D008320 1.5e-76 290.4 301 73.4
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 2.6e-76 289.7 297 66.3
Nitab4.5_0002229g0170 Nicotiana tabacum HOM05D006334 ORTHO05D008320 2.6e-76 289.7 298 71.1
DCAR_022532 Daucus carota HOM05D006334 ORTHO05D008320 4.5e-76 288.9 297 64.3
Phvul.005G092400 Phaseolus vulgaris HOM05D006334 ORTHO05D008320 4.5e-76 288.9 300 72.0
QL08p012879 Quercus lobata HOM05D006334 ORTHO05D008320 1.7e-75 287.0 298 66.8
CAN.G1110.6 Capsicum annuum HOM05D006334 ORTHO05D008320 2.9e-75 286.2 298 71.5
arahy.Tifrunner.gnm1.ann1.9AY9GA Arachis hypogaea HOM05D006334 ORTHO05D008320 5.0e-75 285.4 301 72.4
PSO832G3755 Papaver somniferum HOM05D006334 ORTHO05D008320 6.5e-75 285.0 302 66.2
Nitab4.5_0002342g0070 Nicotiana tabacum HOM05D006334 ORTHO05D008320 1.1e-74 284.3 299 70.2
PSO210G7302 Papaver somniferum HOM05D006334 ORTHO05D008320 1.4e-74 283.9 302 66.9
GSVIVG01001978001 Vitis vinifera HOM05D006334 ORTHO05D008320 3.2e-74 282.7 299 66.2
AUR62015668 Chenopodium quinoa HOM05D006334 ORTHO05D008320 5.5e-74 282.0 294 64.6
Duzib268G1565 Durio zibethinus HOM05D006334 ORTHO05D008320 7.2e-74 281.6 299 71.9
Sc07g0002760 Simmondsia chinensis HOM05D006334 ORTHO05D008320 7.2e-74 281.6 299 69.6
Sabra16G0284400 Salix brachista HOM05D006334 ORTHO05D008320 1.2e-73 280.8 300 62.3
Dinv22296 Davidia involucrata HOM05D006334 ORTHO05D008320 2.1e-73 280.0 299 56.5
Sed0009538 Sechium edule HOM05D006334 ORTHO05D008320 6.1e-73 278.5 291 75.6
Gohir.D01G062800 Gossypium hirsutum HOM05D006334 ORTHO05D008320 1.0e-72 277.7 300 70.3
HanXRQChr11g0337741 Helianthus annuus HOM05D006334 ORTHO05D008320 1.4e-72 277.3 289 67.1
Lj8A166G85 Lonicera japonica HOM05D006334 ORTHO05D008320 1.8e-72 276.9 308 71.1
Ah.04g165560 Amaranthus hybridus HOM05D006334 ORTHO05D008320 3.9e-72 275.8 298 59.1
Hund23297 Selenicereus undatus HOM05D006334 ORTHO05D008320 5.1e-72 275.4 299 65.2
Lj3g0002745 Lotus japonicus HOM05D006334 ORTHO05D008320 6.7e-72 275.0 300 72.7
Eucgr.F03434 Eucalyptus grandis HOM05D006334 ORTHO05D008320 1.1e-71 274.2 302 70.9
Thecc.07G050800 Theobroma cacao HOM05D006334 ORTHO05D008320 2.0e-71 273.5 302 70.9
Gorai.002G083500 Gossypium raimondii HOM05D006334 ORTHO05D008320 4.3e-71 272.3 300 69.7
Gohir.A01G075500 Gossypium hirsutum HOM05D006334 ORTHO05D008320 9.7e-71 271.2 300 69.0
ECA236G0521 Erigeron canadensis HOM05D006334 ORTHO05D008320 3.7e-70 269.2 297 65.3
Atru.chr2.3229 Acer truncatum HOM05D006334 ORTHO05D008320 1.1e-69 267.7 300 63.3
Aa31LG5G10300 Aethionema arabicum HOM05D006334 ORTHO05D008320 1.4e-69 267.3 301 68.4
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 2.4e-69 266.5 299 58.2
Ciclev10009059m.g Citrus clementina HOM05D006334 ORTHO05D008320 3.1e-69 266.2 299 67.9
QL08p012752 Quercus lobata HOM05D006334 ORTHO05D008320 5.3e-69 265.4 188 85.1
AL7G25680 Arabidopsis lyrata HOM05D006334 ORTHO05D008320 2.0e-68 263.5 304 65.8
THA.LOC104812531 Tarenaya hassleriana HOM05D006334 ORTHO05D008320 2.0e-68 263.5 285 71.2
MBI02_g23962_MAGBIO Magnolia biondii HOM05D006334 ORTHO05D008320 5.9e-68 261.9 299 66.6
RhsimUnG0252800 Rhododendron simsii HOM05D006334 ORTHO05D008320 7.7e-68 261.5 412 49.8
Nn1g07058 Nelumbo nucifera HOM05D006334 ORTHO05D008320 2.2e-67 260.0 299 70.9
AT4G27120 Arabidopsis thaliana HOM05D006334 ORTHO05D008320 2.9e-67 259.6 301 70.4
AUR62005409 Chenopodium quinoa HOM05D006334 ORTHO05D008320 3.8e-67 259.2 295 61.0
TAR629G3436 Trochodendron aralioides HOM05D006334 ORTHO05D008320 1.1e-66 257.7 293 68.6
Cc05_g13330 Coffea canephora HOM05D006334 ORTHO05D008320 1.4e-66 257.3 301 68.1
CARHR234770 Cardamine hirsuta HOM05D006334 ORTHO05D008320 9.4e-66 254.6 302 67.5
Os07g0103200 Oryza sativa ssp. japonica HOM05D006334 ORTHO05D008320 9.4e-66 254.6 291 68.7
Ca_01740_v3 Cicer arietinum L. HOM05D006334 ORTHO05D008320 2.7e-65 253.1 300 68.3
Medtr2g083200 Medicago truncatula HOM05D006334 ORTHO05D008320 7.9e-65 251.5 302 65.9
VMungo1080G0184 Vigna mungo HOM05D006334 ORTHO05D008320 2.3e-64 250.0 300 68.7
Glyma.13G288200 Glycine max HOM05D006334 ORTHO05D008320 6.7e-64 248.4 301 69.1
Psat5g251960 Pisum sativum HOM05D006334 ORTHO05D008320 8.8e-64 248.1 300 63.7
PGR031G1291 Punica granatum HOM05D006334 ORTHO05D008320 1.1e-63 247.7 306 69.3
Aqoxy1G03666 Aquilegia oxysepala HOM05D006334 ORTHO05D008320 2.6e-63 246.5 220 71.8
CDE05G3377 Ceratophyllum demersum HOM05D006334 ORTHO05D008320 1.7e-62 243.8 299 59.5
FAN21G3458 Fragaria x ananassa HOM05D006334 ORTHO05D008320 4.1e-61 239.2 305 57.4
Peaxi162Scf00450g00858 Petunia axillaris HOM05D006334 ORTHO05D008320 9.1e-61 238.0 301 62.5
Solyc10g006460.3 Solanum lycopersicum HOM05D006334 ORTHO05D008320 1.6e-60 237.3 183 77.0
Migut.M01801 Erythranthe guttata HOM05D006334 ORTHO05D008320 2.6e-60 236.5 303 66.3
Peaxi162Scf00407g00312 Petunia axillaris HOM05D006334 ORTHO05D008320 4.5e-60 235.7 299 57.9
MSTRG.27096 Avicennia marina HOM05D006334 ORTHO05D008320 1.0e-59 234.6 300 64.0
Carub.0007s1372 Capsella rubella HOM05D006334 ORTHO05D008320 1.0e-59 234.6 301 65.4
Thhalv10025846m.g Eutrema salsugineum HOM05D006334 ORTHO05D008320 2.2e-59 233.4 301 65.8
Sp7g25090 Schrenkiella parvula HOM05D006334 ORTHO05D008320 6.5e-59 231.9 301 66.1
PGSC0003DMG400014399 Solanum tuberosum HOM05D006334 ORTHO05D008320 1.1e-58 231.1 297 64.6
Zm00001eb298180 Zea mays HOM05D006334 ORTHO05D008320 1.1e-58 231.1 209 66.0
A03p57090 Brassica napus HOM05D006334 ORTHO05D008320 2.5e-58 229.9 144 86.1
BraA03t14779Z Brassica rapa HOM05D006334 ORTHO05D008320 2.5e-58 229.9 144 86.1
TPR.G19971 Trifolium pratense HOM05D006334 ORTHO05D008320 2.5e-58 229.9 216 74.5
unitig_748.g7233 Utricularia gibba HOM05D006334 ORTHO05D008320 3.2e-58 229.6 292 61.0
Glyma.12G213500 Glycine max HOM05D006334 ORTHO05D008320 4.2e-58 229.2 301 66.4
BraA01t01781Z Brassica rapa HOM05D006334 ORTHO05D008320 2.7e-57 226.5 142 85.2
BcaC06g32710 Brassica carinata HOM05D006334 ORTHO05D008320 3.6e-57 226.1 143 84.6
C07p54970 Brassica napus HOM05D006334 ORTHO05D008320 3.6e-57 226.1 143 84.6
EL10Ac4g07940 Beta vulgaris HOM05D006334 ORTHO05D008320 4.7e-57 225.7 311 59.8
BolC1t02259H Brassica oleracea HOM05D006334 ORTHO05D008320 6.1e-57 225.3 142 85.2
Carub.0008s0614 Capsella rubella HOM05D006334 ORTHO05D008320 1.4e-56 224.2 307 65.8
Sopen10g002410 Solanum pennellii HOM05D006334 ORTHO05D008320 2.3e-56 223.4 131 85.5
BolC7t46013H Brassica oleracea HOM05D006334 ORTHO05D001501 4.0e-56 222.6 133 87.2
C01p23260 Brassica napus HOM05D006334 ORTHO05D008320 6.7e-56 221.9 142 83.8
SGA_v2.0_scaffold101G29789 Striga asiatica HOM05D006334 ORTHO05D008320 2.6e-55 219.9 290 65.9
A01p18260 Brassica napus HOM05D006334 ORTHO05D008320 7.5e-55 218.4 126 87.3
HPP92_014117 Vanilla planifolia HOM05D006334 ORTHO05D008320 4.8e-54 215.7 297 63.6
BcaNung03057 Brassica carinata HOM05D006334 ORTHO05D008320 5.3e-53 212.2 303 64.7
Lalb_Chr24g0400251 Lupinus albus HOM05D006334 ORTHO05D008320 5.3e-53 212.2 299 63.5
Mapoly0114s0022 Marchantia polymorpha HOM05D006334 ORTHO05D008320 4.2e-50 202.6 213 65.3
SEGI_34639 Sequoiadendron giganteum HOM05D006334 ORTHO05D008320 9.4e-50 201.4 195 70.3
AagrBONN_evm.TU.Sc2ySwM_368.826 Anthoceros agrestis HOM05D006334 ORTHO05D008320 2.0e-47 193.7 194 68.6
AagrBONN_evm.TU.Sc2ySwM_228.581 Anthoceros agrestis HOM05D006334 ORTHO05D008320 4.4e-47 192.6 194 69.1
SMO143G0307 Selaginella moellendorffii HOM05D006334 ORTHO05D008320 2.4e-45 186.8 135 71.1
Actinidia35324 Actinidia chinensis HOM05D006334 ORTHO05D008320 5.9e-44 182.2 105 85.7
Actinidia10714 Actinidia chinensis HOM05D006334 ORTHO05D008320 3.2e-42 176.4 104 86.5
Pp3c20_19360 Physcomitrium patens HOM05D006334 ORTHO05D008320 9.5e-42 174.9 282 55.3
CBR_g8852 Chara braunii HOM05D006334 ORTHO05D008320 2.6e-39 166.8 201 56.2
FAN16G3226 Fragaria x ananassa HOM05D006334 ORTHO05D008320 2.0e-36 157.1 199 67.8
Cpa.g.sc97.55 Carica papaya HOM05D006334 ORTHO05D008320 2.3e-32 143.7 202 66.8
Cre02.g101100 Chlamydomonas reinhardtii HOM05D006334 ORTHO05D008320 3.2e-29 133.3 119 55.5
ATR0697G296 Amborella trichopoda HOM05D006334 ORTHO05D008320 2.7e-28 130.2 221 50.2
Oeu032444.1 Olea europaea HOM05D006334 ORTHO05D008320 6.6e-27 125.6 77 77.9
FAN16G1435 Fragaria x ananassa HOM05D006334 ORTHO05D008320 6.8e-24 115.5 64 89.1
Cpa.g.sc97.53 Carica papaya HOM05D006334 ORTHO05D008320 1.3e-22 111.3 70 84.3
Haze_27349 Corylus avellana HOM05D006334 ORTHO05D008320 3.7e-22 109.8 215 43.3
BcaC09g50615 Brassica carinata HOM05D006334 ORTHO05D008320 8.1e-17 92.0 221 56.6
Actinidia10713 Actinidia chinensis HOM05D006334 ORTHO05D030819 1.2e-07 61.6 51 66.7
Actinidia35323 Actinidia chinensis HOM05D006334 ORTHO05D030819 1.2e-07 61.6 100 44.0


User provided reference genes

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