Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.1e-65 253.1 122 100.0
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.9e-21 104.8 261 29.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.1e-20 103.6 261 28.7
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.1e-20 103.6 268 28.4
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 1.9e-20 102.8 249 30.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.2e-20 101.7 285 28.4
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.2e-20 101.7 285 28.8
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.7e-19 99.0 247 29.6
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 7.9e-19 97.4 243 29.2
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 7.9e-19 97.4 248 28.2
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 7.9e-19 97.4 232 30.2
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.3e-18 96.7 55 76.4
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 3.9e-18 95.1 246 28.0
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.1e-18 94.7 227 28.6
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.6e-18 94.4 68 63.2
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 6.6e-18 94.4 267 27.0
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 8.7e-18 94.0 68 61.8
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 8.7e-18 94.0 55 74.5
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 8.7e-18 94.0 55 72.7
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.1e-17 93.6 63 68.3
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.9e-17 92.8 65 69.2
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.3e-17 92.0 55 74.5
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 3.3e-17 92.0 267 26.6
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 4.3e-17 91.7 55 72.7
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 5.6e-17 91.3 55 69.1
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 5.6e-17 91.3 88 55.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 7.3e-17 90.9 55 70.9
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 7.3e-17 90.9 55 76.4
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 7.3e-17 90.9 55 76.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 7.3e-17 90.9 55 72.7
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 9.6e-17 90.5 254 27.2
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 9.6e-17 90.5 55 72.7
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 9.6e-17 90.5 55 70.9
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 9.6e-17 90.5 277 26.0
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.3e-16 90.1 57 70.2
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.3e-16 90.1 55 70.9
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.3e-16 90.1 97 51.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.6e-16 89.7 55 70.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 1.6e-16 89.7 55 70.9
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.8e-16 89.0 55 69.1
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 3.6e-16 88.6 53 71.7
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 4.8e-16 88.2 55 70.9
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 4.8e-16 88.2 55 69.1
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 4.8e-16 88.2 55 70.9
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 4.8e-16 88.2 86 50.0
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 6.2e-16 87.8 55 70.9
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 6.2e-16 87.8 55 69.1
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 8.1e-16 87.4 55 69.1
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.1e-15 87.0 278 25.9
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.1e-15 87.0 55 70.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.1e-15 87.0 53 71.7
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.1e-15 87.0 55 70.9
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.4e-15 86.7 55 69.1
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.4e-15 86.7 55 69.1
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.4e-15 86.7 93 51.6
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.4e-15 86.7 55 69.1
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.4e-15 86.7 55 69.1
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.8e-15 86.3 55 67.3
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.8e-15 86.3 55 67.3
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-15 85.9 55 69.1
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.4e-15 85.9 55 69.1
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 2.4e-15 85.9 55 67.3
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.1e-15 85.5 55 69.1
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 3.1e-15 85.5 55 67.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.1e-15 85.5 77 53.2
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.0e-15 85.1 56 67.9
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.0e-15 85.1 56 67.9
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 5.3e-15 84.7 55 69.1
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 5.3e-15 84.7 55 69.1
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.9e-15 84.3 55 67.3
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 9.0e-15 84.0 55 65.5
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 9.0e-15 84.0 55 69.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 9.0e-15 84.0 242 27.3
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.2e-14 83.6 55 65.5
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 1.5e-14 83.2 55 67.3
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.5e-14 83.2 55 63.6
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.5e-14 83.2 55 63.6
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-14 83.2 65 56.9
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.5e-14 83.2 55 67.3
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.5e-14 83.2 55 67.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.0e-14 82.8 55 65.5
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 2.6e-14 82.4 260 25.4
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 3.4e-14 82.0 67 55.2
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 4.5e-14 81.6 55 63.6
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 9.9e-14 80.5 55 61.8
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 1.7e-13 79.7 55 65.5
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.2e-13 79.3 87 50.6
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.2e-13 79.3 84 52.4
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 3.8e-13 78.6 55 63.6
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 8.4e-13 77.4 53 64.2
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 3.2e-12 75.5 87 48.3
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 3.2e-12 75.5 87 49.4
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 5.4e-12 74.7 87 48.3
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 5.4e-12 74.7 56 60.7
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 7.1e-12 74.3 56 60.7
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.6e-11 73.2 87 49.4
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.6e-11 73.2 87 48.3
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.1e-11 72.8 253 24.1
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.1e-11 72.8 253 24.1
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 2.1e-11 72.8 253 24.1
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.1e-11 72.8 253 24.1
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.1e-11 72.8 44 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 4.6e-11 71.6 55 63.6
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 6.0e-11 71.2 54 59.3
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 7.9e-11 70.9 54 59.3
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 7.9e-11 70.9 54 59.3
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.8e-10 69.7 219 24.2
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.0e-10 68.9 46 69.6
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.0e-10 68.9 50 62.0
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.7e-10 67.8 50 62.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.9e-09 66.2 46 65.2
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 2.5e-09 65.9 54 55.6
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 9.6e-09 63.9 46 60.9
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 9.6e-09 63.9 46 63.0
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.1e-08 62.8 56 51.8
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.7e-08 62.0 46 58.7
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.8e-08 61.6 69 43.5
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 5.3e-07 58.2 57 50.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.2e-06 57.0 63 42.9


User provided reference genes

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