Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 0.0e+00 1100.5 538 100.0
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.7e-275 952.2 525 90.7
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.8e-273 944.9 525 89.7
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 7.1e-261 903.7 526 85.4
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 1.5e-221 773.1 523 72.8
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.1e-216 756.9 523 71.3
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 2.0e-215 752.7 524 71.8
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 4.5e-215 751.5 525 71.8
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 3.8e-214 748.4 516 71.5
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 5.0e-214 748.0 521 70.1
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 6.5e-214 747.7 526 70.5
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.9e-213 746.1 513 71.3
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.6e-212 743.0 513 70.8
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 2.7e-212 742.3 515 71.8
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 5.2e-211 738.0 518 70.8
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 7.5e-210 734.2 510 71.4
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 9.8e-210 733.8 513 69.6
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.2e-209 732.6 510 71.0
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 3.1e-208 728.8 524 68.9
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 7.0e-208 727.6 530 68.3
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 9.1e-208 727.2 513 69.8
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.0e-206 723.8 514 70.0
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 8.5e-206 720.7 472 73.5
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.1e-205 720.3 523 68.1
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 2.5e-205 719.2 535 66.5
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 3.2e-205 718.8 517 68.7
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 3.2e-205 718.8 472 73.3
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.2e-204 716.8 524 67.4
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 1.6e-204 716.5 524 68.5
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.6e-204 716.5 524 68.7
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.6e-204 716.5 530 68.1
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 4.7e-204 714.9 530 67.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 6.1e-204 714.5 474 73.0
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 5.2e-203 711.4 513 69.2
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 8.8e-203 710.7 522 66.7
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 5.7e-202 708.0 472 71.4
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 4.9e-201 704.9 525 66.1
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.4e-200 703.4 497 68.8
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.2e-199 700.3 517 68.9
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.0e-199 699.5 513 67.4
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.0e-199 699.5 519 66.5
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 2.7e-199 699.1 491 70.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 5.9e-199 698.0 456 74.3
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 2.3e-198 696.0 543 65.7
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 6.6e-198 694.5 527 65.3
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.5e-197 693.3 505 68.5
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 5.6e-197 691.4 544 64.5
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.6e-196 689.9 536 65.5
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.6e-196 689.9 512 67.8
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 3.6e-196 688.7 512 66.2
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 3.6e-196 688.7 505 66.9
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 3.6e-196 688.7 499 67.9
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 4.7e-196 688.3 512 66.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 4.7e-196 688.3 493 69.8
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 4.7e-196 688.3 538 64.3
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.0e-195 687.2 505 67.3
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.4e-195 686.8 515 66.4
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.8e-195 686.4 507 66.9
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 3.0e-195 685.6 495 68.1
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 5.2e-195 684.9 513 66.5
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 1.2e-194 683.7 463 70.6
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.0e-194 682.9 505 67.1
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.0e-194 682.9 530 65.3
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 3.4e-194 682.2 487 68.6
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.7e-193 679.9 492 66.7
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.7e-193 678.7 537 64.2
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 4.1e-192 675.2 500 67.0
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.2e-191 673.7 505 66.3
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 2.0e-191 672.9 503 66.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.0e-191 672.9 463 69.1
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.0e-190 670.6 534 64.0
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 3.0e-190 669.1 508 65.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 1.5e-186 656.8 505 64.6
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 3.4e-186 655.6 514 64.4
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-183 647.1 521 62.8
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.6e-183 646.7 459 70.2
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 2.3e-182 642.9 522 64.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.5e-181 640.2 505 63.8
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.2e-178 630.6 415 72.8
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 3.4e-178 629.0 466 66.1
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.7e-177 625.5 466 66.5
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 4.1e-176 622.1 426 70.7
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.3e-171 606.3 494 57.7
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 9.9e-170 600.9 526 58.0
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.9e-168 596.7 473 62.6
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.7e-167 592.8 518 61.6
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 7.6e-162 574.7 518 59.5
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 9.6e-149 531.2 518 55.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.9e-145 518.8 366 71.0
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 6.4e-145 518.5 477 52.8
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 2.4e-144 516.5 471 53.1
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.6e-140 503.8 346 72.3
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.5e-137 491.9 332 73.8
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 1.3e-134 484.2 329 73.3
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 8.7e-134 481.5 356 68.3
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 5.3e-131 472.2 459 49.7
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.9e-125 453.8 424 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 8.2e-116 421.8 421 50.1
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 7.2e-112 408.7 285 73.0
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 6.3e-108 395.6 325 59.1
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.7e-105 387.5 400 48.5
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 5.2e-102 375.9 300 65.3
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.5e-97 359.0 422 48.6
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 2.7e-90 337.0 246 67.9
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.2e-84 317.4 284 58.1
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 9.2e-83 312.0 545 37.6
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 1.1e-75 288.5 228 64.5
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 2.3e-73 280.8 215 63.3
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.3e-65 255.0 544 31.4
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.7e-50 204.1 173 57.2
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 4.5e-37 160.2 136 57.4
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 1.7e-36 158.3 461 29.1
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.4e-27 128.6 89 71.9
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 7.1e-27 126.3 104 62.5
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.3e-24 117.1 385 26.0
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.9e-20 104.4 422 26.5
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 1.2e-18 99.0 73 56.2
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.7e-18 97.8 102 52.0
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.6e-18 97.1 181 30.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.2e-15 88.2 71 60.6
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.2e-15 86.3 82 57.3
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 9.0e-14 82.8 107 47.7
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 2.2e-12 78.2 91 50.5
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 2.1e-10 71.6 32 87.5
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.5e-08 64.7 88 42.0


User provided reference genes

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