Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.6e-226 788.5 422 100.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.3e-214 749.6 422 95.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.4e-208 729.6 422 92.9
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.6e-157 558.1 392 75.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.8e-155 553.1 427 71.9
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 9.0e-155 550.8 390 72.3
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.5e-154 550.1 393 71.5
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.4e-154 548.9 431 72.6
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 7.6e-154 547.7 396 73.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 9.9e-154 547.4 427 72.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.9e-153 545.8 433 71.6
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.4e-152 543.5 428 69.4
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.3e-150 536.2 397 69.5
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.0e-150 535.8 390 71.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 3.9e-150 535.4 429 68.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.1e-150 535.0 429 67.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.3e-149 531.9 432 69.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 9.6e-149 530.8 390 70.8
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-148 530.4 428 69.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 2.1e-148 529.6 427 67.2
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-147 527.3 430 69.5
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.4e-147 526.9 436 70.2
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.8e-147 526.6 383 68.1
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.4e-147 526.2 386 67.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.4e-147 526.2 382 68.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-146 523.9 431 68.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.5e-146 523.5 429 67.6
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.5e-146 523.5 427 64.4
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 9.9e-146 520.8 388 69.6
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 8.4e-145 517.7 398 65.6
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-144 516.5 431 66.8
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.4e-144 516.2 431 67.1
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-144 516.2 430 67.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-144 516.2 431 67.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-144 516.2 431 67.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.4e-144 516.2 395 67.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 5.5e-144 515.0 427 66.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.1e-143 513.1 429 63.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.7e-143 512.7 431 65.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 7.9e-143 511.1 390 69.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-142 510.4 434 68.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.8e-142 510.0 396 70.5
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.0e-142 509.2 389 68.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.1e-142 508.4 431 66.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.5e-141 506.9 434 67.5
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-141 506.5 434 67.5
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.8e-140 502.7 390 67.7
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.7e-140 502.3 427 66.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 3.1e-139 499.2 395 66.6
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 4.0e-139 498.8 429 67.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 5.3e-139 498.4 432 68.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.3e-139 498.4 391 65.0
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.9e-139 498.0 386 68.9
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.6e-138 496.1 394 66.2
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.6e-138 496.1 426 67.8
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.4e-138 495.7 386 70.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.4e-138 495.7 391 68.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.5e-138 495.4 391 67.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 5.8e-138 495.0 434 67.7
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.8e-137 492.3 428 68.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.4e-137 491.1 387 68.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.9e-136 490.0 402 64.4
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.6e-135 486.9 357 69.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.7e-135 486.1 430 62.8
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.5e-135 485.7 429 64.6
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 4.6e-135 485.3 389 65.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.0e-134 484.2 389 62.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.0e-134 484.2 398 65.1
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.3e-134 483.8 431 64.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.8e-134 483.4 386 65.0
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 8.7e-134 481.1 390 65.9
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.5e-133 480.3 418 61.7
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 4.3e-133 478.8 432 62.5
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.7e-133 478.4 385 67.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 3.7e-132 475.7 437 63.6
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.1e-131 474.2 419 62.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.4e-131 473.8 425 65.4
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.2e-130 470.7 394 63.7
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.5e-130 470.3 386 65.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.4e-130 469.2 423 64.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.5e-130 468.8 401 67.3
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.3e-129 467.2 394 65.2
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.7e-129 466.8 387 65.4
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.0e-129 465.3 387 63.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 5.0e-129 465.3 394 65.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 5.0e-129 465.3 400 65.0
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 8.5e-129 464.5 393 64.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.1e-128 464.2 428 63.3
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-128 464.2 422 63.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.9e-128 463.4 424 63.2
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 5.5e-128 461.8 384 64.1
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 5.5e-128 461.8 384 64.1
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.3e-128 461.1 386 64.0
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-127 460.7 384 63.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.2e-127 460.7 384 63.8
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.9e-126 455.7 392 63.0
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 5.1e-126 455.3 423 60.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.3e-125 452.2 439 59.5
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.7e-125 451.8 380 63.9
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.7e-124 449.1 391 61.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.1e-123 445.7 423 61.2
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-122 444.1 429 63.6
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.2e-122 444.1 395 61.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.0e-122 443.4 376 61.2
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.4e-122 442.6 428 62.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 6.5e-121 438.3 428 61.9
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-120 437.2 423 61.5
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 4.2e-120 435.6 422 59.2
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.6e-119 433.7 423 61.2
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.4e-117 424.9 424 60.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.7e-113 413.7 321 66.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.2e-113 413.3 393 56.2
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 5.0e-113 412.1 393 56.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-112 411.0 392 56.1
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.1e-109 401.0 420 58.6
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-106 389.8 377 57.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.5e-104 383.3 411 52.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.1e-103 380.2 394 53.3
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.6e-103 379.4 381 55.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 5.2e-102 375.6 307 64.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.8e-94 350.5 391 49.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.1e-87 327.0 309 57.3
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.5e-85 320.9 429 46.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 2.9e-76 290.0 239 63.6
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.6e-66 256.1 294 48.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.9e-65 253.1 228 56.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.5e-64 251.1 232 59.1
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.7e-60 237.7 166 71.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 8.3e-60 235.3 393 37.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.0e-57 226.9 220 53.6
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.5e-56 223.8 191 74.3
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.5e-56 221.9 155 75.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.4e-54 218.0 151 72.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.8e-52 209.9 204 56.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 7.1e-51 205.7 145 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.1e-40 171.8 303 35.3
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 7.3e-40 169.1 354 34.5
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 3.8e-20 103.6 112 54.5
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.3e-16 90.5 76 57.9
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.2e-13 82.0 72 55.6
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.3e-08 63.5 93 48.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 9.7e-08 62.4 161 30.4
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.1e-06 58.9 147 33.3
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 9.1e-06 55.8 36 63.9


User provided reference genes

Program Settings