Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 0.0e+00 1243.4 633 100.0
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.6e-280 969.1 544 92.6
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 2.7e-280 968.4 546 93.0
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.1e-276 956.4 546 91.6
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 1.7e-221 773.1 559 73.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 3.7e-221 771.9 546 74.7
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 9.5e-217 757.3 546 71.2
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 2.1e-216 756.1 546 71.8
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 2.8e-216 755.7 544 72.4
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 2.9e-213 745.7 546 71.6
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 6.4e-213 744.6 547 71.1
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.8e-212 743.0 546 70.7
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 5.9e-211 738.0 546 70.1
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 1.0e-210 737.3 545 69.5
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.5e-209 733.4 546 68.7
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 2.5e-209 732.6 546 68.1
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 5.6e-209 731.5 545 69.0
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.2e-208 730.3 546 68.3
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 1.2e-208 730.3 545 68.8
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 6.2e-208 728.0 550 67.5
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 4.0e-207 725.3 548 67.7
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 4.0e-207 725.3 545 68.1
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 4.0e-207 725.3 546 67.9
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 4.4e-206 721.8 546 68.7
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 7.5e-206 721.1 546 70.0
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 2.4e-204 716.1 546 68.3
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.2e-203 713.8 545 67.2
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 1.6e-203 713.4 552 68.3
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 2.0e-203 713.0 544 67.1
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 6.0e-203 711.4 541 68.0
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 2.3e-202 709.5 546 67.9
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 3.3e-201 705.7 546 66.5
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 4.3e-201 705.3 546 66.5
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 2.1e-200 703.0 546 66.5
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 2.0e-198 696.4 546 66.5
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 4.9e-197 691.8 546 66.3
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.6e-195 686.8 549 65.8
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.5e-193 680.2 546 65.2
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 2.5e-193 679.5 532 66.7
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 8.9e-191 671.0 551 63.7
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.5e-190 670.2 553 63.7
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.5e-190 670.2 552 63.9
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 3.4e-190 669.1 552 63.4
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 2.2e-189 666.4 552 63.6
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 4.9e-189 665.2 552 63.4
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 6.4e-189 664.8 550 63.6
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 8.4e-189 664.5 553 63.7
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.1e-188 664.1 545 62.0
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 2.4e-188 662.9 546 63.9
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 9.2e-188 661.0 545 65.0
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.3e-186 657.1 545 63.9
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 1.3e-186 657.1 551 63.0
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 4.3e-185 652.1 570 61.4
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 3.6e-184 649.0 554 60.6
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 2.4e-183 646.4 543 62.4
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 2.4e-183 646.4 565 62.3
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.3e-181 640.6 536 63.1
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 2.9e-181 639.4 475 70.5
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 8.4e-181 637.9 549 62.1
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 1.3e-178 630.6 548 62.4
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 1.1e-177 627.5 546 59.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 1.4e-175 620.5 540 60.2
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 7.6e-174 614.8 661 54.2
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.7e-173 613.6 474 65.4
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 2.2e-173 613.2 549 59.2
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.2e-172 609.4 546 57.5
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 4.2e-172 609.0 546 58.6
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 1.6e-171 607.1 548 58.6
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 5.6e-169 598.6 555 58.4
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 1.6e-168 597.0 545 56.7
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 6.9e-167 591.7 524 59.5
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 3.4e-166 589.3 460 64.8
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 9.3e-164 581.3 484 62.2
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 1.0e-162 577.8 544 57.7
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.3e-162 577.4 478 63.4
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 3.9e-162 575.9 573 56.7
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 6.0e-155 552.0 561 56.3
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 7.4e-153 545.0 543 56.4
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.6e-152 543.9 557 54.9
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 8.2e-152 541.6 589 54.3
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 1.7e-149 533.9 541 52.9
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.9e-148 530.4 631 48.7
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 8.5e-133 478.4 316 75.0
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 1.7e-128 464.2 360 67.2
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 7.0e-127 458.8 548 46.7
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.6e-126 456.8 437 57.9
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 7.7e-126 455.3 499 53.1
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.3e-125 454.5 357 65.3
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 2.3e-122 443.7 477 54.1
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 3.0e-122 443.4 382 60.5
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 5.2e-122 442.6 382 59.7
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 5.5e-116 422.5 551 43.4
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 6.1e-115 419.1 416 52.9
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.8e-114 415.6 551 42.1
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.8e-114 415.6 551 42.1
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 1.7e-112 411.0 538 48.1
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 9.8e-105 385.2 285 70.2
HPP92_021631 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.2e-91 341.7 339 52.5
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 2.1e-83 314.3 252 70.2
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.9e-76 291.2 413 39.7
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 2.9e-72 277.3 285 53.7
Thhalv10017610m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 7.1e-71 272.7 313 50.5
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 2.3e-69 267.7 210 65.2
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 2.1e-67 261.2 190 68.9
Peaxi162Scf00420g00935 Petunia axillaris HOM05D001087 ORTHO05D005406 5.1e-61 240.0 252 53.6
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 5.8e-57 226.5 267 46.8
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 4.2e-55 220.3 502 29.7
Nitab4.5_0000519g0380 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.8e-51 207.6 171 62.6
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 8.1e-51 206.1 175 61.7
Glyma.04G126700 Glycine max HOM05D001087 ORTHO05D005406 2.9e-48 197.6 145 65.5
BcaC05g25411 Brassica carinata HOM05D001087 ORTHO05D005406 7.1e-47 193.0 254 46.1
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.7e-46 191.0 139 65.5
Nitab4.5_0005199g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.1e-42 179.1 295 39.0
Glyma.09G128151 Glycine max HOM05D001087 ORTHO05D005406 3.4e-41 174.1 126 65.1
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.2e-40 171.4 172 58.1
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 2.5e-39 167.9 193 52.3
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.4e-34 152.1 111 66.7
Nitab4.5_0000136g0080 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.2e-33 149.1 373 30.3
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 9.3e-31 139.4 156 50.6
RcHm_v2.0_Chr7g0218031 Rosa chinensis HOM05D001087 ORTHO05D005406 8.7e-29 132.9 103 68.9
Lj7C620T11 Lonicera japonica HOM05D001087 ORTHO05D005406 1.4e-26 125.6 114 65.8
RcHm_v2.0_Chr1g0366171 Rosa chinensis HOM05D001087 ORTHO05D017953 8.5e-24 116.3 112 54.5
Psat0s3545g0040 Pisum sativum HOM05D001087 ORTHO05D005406 9.7e-20 102.8 78 70.5
Os11g0543800 Oryza sativa ssp. japonica HOM05D001087 ORTHO05D005406 2.4e-18 98.2 71 59.2
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 2.9e-16 91.3 80 58.8
HanXRQChr13g0414341 Helianthus annuus HOM05D001087 ORTHO05D005406 4.5e-09 67.4 56 55.4


User provided reference genes

Program Settings