Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.3e-111 405.6 210 100.0
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 6.8e-95 350.9 211 90.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 6.6e-82 307.8 193 86.0
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 8.0e-80 300.8 216 80.6
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.9e-49 199.9 220 57.7
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.5e-49 199.5 202 59.9
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.8e-48 196.1 222 57.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.8e-47 193.4 198 60.6
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.8e-47 193.4 198 60.6
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.5e-46 190.3 228 54.8
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.0e-46 189.9 224 55.8
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 4.5e-46 188.7 203 58.1
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.2e-45 186.4 205 57.6
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.2e-45 186.4 207 60.9
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 4.9e-45 185.3 215 55.3
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 4.9e-45 185.3 224 55.4
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.9e-45 185.3 218 54.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 6.4e-45 184.9 207 58.0
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.2e-44 182.2 221 54.8
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-43 179.1 226 54.0
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.8e-42 176.8 200 57.5
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.9e-42 175.6 202 56.4
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 9.6e-41 171.0 204 53.9
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 2.1e-40 169.9 199 54.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.8e-40 169.5 227 50.2
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.1e-39 167.5 229 50.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.8e-39 166.8 182 60.4
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 4.0e-39 165.6 218 54.6
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.3e-39 165.2 201 53.2
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.9e-39 164.9 224 50.9
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.6e-38 162.9 224 51.3
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.6e-38 161.4 196 54.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 4.9e-37 158.7 221 48.9
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.4e-37 157.9 202 52.5
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.5e-36 156.4 210 50.0
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 7.1e-36 154.8 215 50.7
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.2e-35 154.1 207 52.7
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.6e-35 153.7 222 50.5
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 4.6e-35 152.1 201 50.2
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 6.0e-35 151.8 205 50.2
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.8e-34 150.2 216 49.1
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 3.9e-34 149.1 195 55.4
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 5.1e-34 148.7 223 48.9
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 5.7e-33 145.2 214 50.5
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 9.6e-33 144.4 224 54.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.6e-32 143.7 205 48.3
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.8e-32 142.9 182 54.9
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 8.2e-32 141.4 208 49.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.1e-31 141.0 207 51.7
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.8e-31 140.2 199 50.3
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.4e-31 139.8 196 46.9
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 5.3e-31 138.7 216 49.1
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 5.3e-31 138.7 214 47.7
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 9.0e-31 137.9 174 55.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 9.0e-31 137.9 171 55.0
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-30 137.1 214 51.4
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.5e-30 137.1 218 47.7
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.6e-30 136.3 180 48.3
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.4e-30 136.0 217 51.2
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 4.5e-30 135.6 216 45.8
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.5e-30 135.6 211 47.4
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-29 133.7 180 47.2
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.5e-29 131.7 208 47.1
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.4e-29 131.3 208 47.1
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-28 131.0 221 51.1
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-28 131.0 221 51.1
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-28 131.0 214 47.2
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-28 131.0 215 47.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.4e-28 130.6 223 47.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.5e-28 129.8 182 51.6
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.2e-28 129.4 217 46.1
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.1e-28 128.3 211 46.4
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.3e-28 127.9 175 46.9
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.6e-27 125.6 225 50.2
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 4.6e-27 125.6 174 51.7
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.9e-25 120.2 168 53.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.5e-25 119.8 241 40.7
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.3e-25 119.4 233 42.9
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 5.7e-25 118.6 185 49.7
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 7.4e-25 118.2 213 42.7
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.3e-24 117.5 237 41.4
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.2e-24 116.7 211 42.7
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.7e-24 115.9 216 44.4
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.2e-24 114.8 150 50.7
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.1e-23 112.8 217 47.9
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 4.1e-23 112.5 231 39.8
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 6.9e-23 111.7 236 40.3
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.0e-22 110.2 190 45.3
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.0e-21 107.8 233 39.1
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.0e-21 107.8 191 45.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.3e-21 107.5 232 39.2
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.3e-21 107.5 232 39.2
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.2e-21 106.7 192 43.2
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 5.0e-21 105.5 232 38.8
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.0e-21 105.5 232 38.8
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 8.5e-21 104.8 246 38.6
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-20 104.4 280 35.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-20 104.0 151 49.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.5e-20 103.2 230 38.7
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.5e-20 103.2 177 46.3
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 3.2e-20 102.8 188 43.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 9.4e-20 101.3 232 37.9
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.6e-19 100.5 258 36.8
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.6e-19 100.5 236 37.7
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 7.9e-19 98.2 237 36.7
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.8e-18 97.1 120 55.8
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.3e-18 96.7 215 40.5
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.9e-18 95.9 254 35.8
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.9e-18 95.9 199 41.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 5.1e-18 95.5 169 43.8
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 8.8e-18 94.7 205 38.5
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 8.8e-18 94.7 237 37.6
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.1e-17 94.4 126 49.2
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.0e-17 93.6 261 33.3
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.3e-17 92.8 205 42.0
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.7e-17 92.0 223 37.7
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 5.7e-17 92.0 121 53.7
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.3e-16 90.9 187 42.8
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.2e-16 90.1 122 54.1
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 2.2e-16 90.1 147 44.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 2.8e-16 89.7 178 43.3
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-16 89.4 231 38.5
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 3.7e-16 89.4 212 38.7
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.8e-16 89.0 251 35.9
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 8.2e-16 88.2 158 40.5
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 2.4e-15 86.7 304 31.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.1e-15 85.9 180 37.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 6.9e-15 85.1 131 45.0
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 6.9e-15 85.1 226 38.9
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.4e-14 82.8 228 39.5
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 5.9e-14 82.0 157 40.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.3e-13 80.9 302 28.8
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-13 80.5 223 37.7
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 5.0e-13 79.0 263 33.8
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 6.5e-13 78.6 222 37.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.5e-13 78.2 299 29.4
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.4e-12 77.4 173 39.9
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.6e-11 73.9 105 48.6
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 3.6e-11 72.8 130 40.0
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 4.7e-11 72.4 224 34.4
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.7e-11 72.4 163 39.9
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.7e-10 68.6 85 47.1
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 2.6e-09 66.6 220 32.3
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 2.6e-09 66.6 228 33.3
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.2e-08 61.6 98 45.9
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 8.2e-08 61.6 106 49.1
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.8e-07 60.5 160 34.4


User provided reference genes

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