Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 9.8e-209 729.9 384 100.0
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 6.7e-125 451.4 385 67.3
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 7.0e-122 441.4 399 65.2
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 1.2e-105 387.5 392 58.7
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 5.9e-105 385.2 385 58.2
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 7.7e-105 384.8 385 57.1
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 7.7e-105 384.8 385 57.1
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 8.6e-104 381.3 385 59.2
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.1e-103 380.9 385 56.6
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 5.6e-103 378.6 384 58.3
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 9.5e-103 377.9 384 56.5
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.0e-101 374.4 384 56.2
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 2.3e-101 373.2 384 56.0
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 2.3e-101 373.2 384 55.2
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 4.0e-101 372.5 384 57.8
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.2e-100 370.9 419 54.9
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 2.6e-100 369.8 384 58.1
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 2.9e-99 366.3 384 56.5
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 6.4e-99 365.2 384 56.0
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 8.3e-99 364.8 386 56.2
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.1e-98 364.4 384 56.0
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 1.8e-98 363.6 386 57.0
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 4.1e-98 362.5 302 66.9
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 5.4e-98 362.1 384 55.7
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 1.2e-97 360.9 384 55.2
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 2.0e-97 360.1 386 55.7
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 7.8e-97 358.2 427 53.2
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 5.0e-96 355.5 387 54.0
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 5.0e-96 355.5 391 53.5
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 8.6e-96 354.8 385 55.8
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 3.3e-95 352.8 385 54.5
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 4.3e-95 352.4 387 53.7
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 4.3e-95 352.4 397 53.9
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 9.5e-95 351.3 387 54.3
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 1.6e-94 350.5 385 54.0
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 4.7e-94 349.0 395 54.2
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 6.2e-94 348.6 388 53.1
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 1.0e-93 347.8 391 52.9
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 1.8e-93 347.1 387 53.5
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 2.3e-93 346.7 377 54.4
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 3.1e-93 346.3 385 53.5
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 4.0e-93 345.9 387 53.2
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 5.2e-93 345.5 388 53.1
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 2.0e-92 343.6 387 53.5
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 2.6e-92 343.2 387 53.0
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 2.6e-92 343.2 387 53.0
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 2.6e-92 343.2 386 53.6
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 2.6e-92 343.2 392 54.1
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 3.4e-92 342.8 384 54.2
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 4.4e-92 342.4 384 52.6
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 7.5e-92 341.7 387 52.7
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 7.5e-92 341.7 387 53.2
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 1.7e-91 340.5 387 52.5
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 4.9e-91 339.0 387 52.7
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 6.4e-91 338.6 386 52.3
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 1.9e-90 337.0 387 52.5
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 1.9e-90 337.0 388 54.1
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 2.4e-90 336.7 300 62.0
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 3.2e-90 336.3 386 52.3
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 4.1e-90 335.9 384 53.6
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 5.4e-90 335.5 384 52.6
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.2e-89 334.3 387 53.0
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 1.6e-89 334.0 302 59.6
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 3.9e-88 329.3 348 54.3
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 3.3e-87 326.2 348 54.0
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 6.2e-86 322.0 262 67.9
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 2.3e-85 320.1 384 49.7
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 2.0e-84 317.0 427 49.4
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 2.0e-84 317.0 285 59.3
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 3.4e-84 316.2 351 53.0
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 7.5e-84 315.1 347 53.0
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.7e-83 313.9 347 53.3
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 8.3e-83 311.6 386 47.7
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 2.4e-82 310.1 290 57.6
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 6.6e-80 302.0 407 48.6
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 1.5e-79 300.8 294 55.8
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 4.3e-79 299.3 291 55.7
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 1.2e-78 297.7 284 59.5
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 5.8e-76 288.9 256 58.6
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 7.6e-76 288.5 402 44.3
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 2.1e-73 280.4 193 74.1
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 4.6e-73 279.3 400 45.5
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 6.0e-73 278.9 175 78.9
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 5.1e-72 275.8 175 78.9
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 4.3e-71 272.7 289 51.9
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 9.6e-71 271.6 291 51.9
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 1.2e-68 264.6 330 50.6
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 5.8e-68 262.3 175 77.7
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 3.2e-66 256.5 350 48.3
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 1.7e-64 250.8 175 66.3
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 8.7e-64 248.4 261 52.5
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 1.8e-61 240.7 378 42.9
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 2.6e-60 236.9 375 44.3
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.1e-55 221.5 172 66.9
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 3.6e-54 216.5 153 74.5
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 3.1e-53 213.4 268 45.5
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 4.9e-51 206.1 304 38.5
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 1.6e-46 191.0 181 61.9
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 9.3e-42 175.3 249 41.8
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 6.5e-35 152.5 185 50.8
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 1.8e-24 117.9 82 74.4
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 1.5e-23 114.8 265 35.1
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 9.7e-23 112.1 118 55.9
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 1.4e-21 108.2 146 45.9
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 5.3e-21 106.3 146 45.2
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 4.5e-20 103.2 146 46.6
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 1.7e-19 101.3 273 29.7
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 8.5e-19 99.0 163 35.0
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 2.5e-18 97.4 120 50.0
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 2.5e-18 97.4 154 44.2
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.5e-18 97.4 79 64.6
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 1.8e-16 91.3 52 80.8
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 1.8e-16 91.3 53 83.0
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 1.8e-16 91.3 54 81.5
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 2.0e-15 87.8 49 83.7
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 2.0e-15 87.8 54 79.6
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 1.3e-14 85.1 49 79.6
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.3e-14 85.1 74 62.2
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 1.8e-13 81.3 54 70.4
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 7.7e-12 75.9 49 73.5
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 2.5e-10 70.9 126 38.9
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.8e-08 64.7 52 59.6
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-07 60.5 134 36.6
Carub.0003s2623 Capsella rubella HOM05D006555 ORTHO05D008376 9.7e-07 58.9 153 23.5
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 9.7e-07 58.9 151 27.8
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 1.3e-06 58.5 46 58.7
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 2.2e-06 57.8 37 64.9
MELO3C030124.2 Cucumis melo HOM05D061452 ORTHO05D167660 2.2e-06 57.8 99 36.4


User provided reference genes

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