Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.9e-238 828.9 460 100.0
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.8e-212 742.7 460 90.9
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.7e-186 656.4 458 83.0
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 9.8e-155 550.8 380 83.9
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 5.0e-143 511.9 456 66.0
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 4.7e-141 505.4 459 67.1
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.0e-140 504.2 460 66.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 5.2e-140 501.9 456 66.7
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 8.9e-140 501.1 458 68.1
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 8.9e-140 501.1 455 67.3
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 3.2e-137 492.7 470 65.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 9.2e-137 491.1 461 66.4
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 3.5e-136 489.2 468 65.2
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 4.6e-136 488.8 457 64.6
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.7e-135 486.9 449 66.1
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 6.6e-135 485.0 459 65.8
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 8.6e-135 484.6 455 65.7
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 3.3e-134 482.6 459 65.6
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.1e-133 478.0 457 64.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 8.1e-133 478.0 459 64.9
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-132 475.7 459 63.4
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.2e-131 474.2 459 63.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.5e-131 473.8 457 64.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.6e-131 473.0 457 64.3
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 9.8e-131 471.1 453 65.1
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.9e-130 469.5 462 64.7
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.6e-128 463.8 453 64.7
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.0e-127 461.1 456 65.8
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 3.0e-127 459.5 462 63.9
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 3.9e-127 459.1 456 65.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.6e-125 453.8 456 65.4
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.8e-125 453.0 462 63.6
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.5e-123 447.2 461 62.5
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 4.9e-122 442.2 386 69.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 3.2e-121 439.5 458 62.2
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 6.6e-119 431.8 457 60.4
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 4.3e-118 429.1 465 60.6
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.1e-117 426.8 407 63.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.1e-117 426.8 497 55.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 3.6e-117 426.0 460 59.6
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.6e-117 426.0 427 62.5
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 8.1e-117 424.9 460 59.6
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.4e-116 424.1 456 61.6
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.4e-116 423.3 430 62.8
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.4e-116 423.3 427 62.1
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 4.0e-116 422.5 415 63.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.0e-116 422.5 458 59.0
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 5.2e-116 422.2 459 59.9
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 6.9e-116 421.8 427 61.6
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.2e-115 421.0 427 61.1
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 7.6e-115 418.3 457 57.3
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 9.9e-115 417.9 460 59.3
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.2e-114 416.8 427 61.8
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.9e-114 415.6 376 67.0
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 4.9e-114 415.6 458 59.2
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 8.4e-114 414.8 456 56.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.9e-113 413.7 436 60.1
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 9.3e-113 411.4 450 59.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.6e-112 410.6 432 60.6
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 2.1e-112 410.2 344 72.1
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 3.3e-110 402.9 410 62.7
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 9.6e-110 401.4 384 67.7
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.1e-109 400.2 457 58.9
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.1e-109 400.2 506 54.0
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.1e-109 400.2 456 58.6
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 3.6e-109 399.4 386 66.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.4e-108 396.7 368 68.8
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 4.0e-108 396.0 383 64.2
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 5.3e-108 395.6 446 60.3
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.2e-107 394.4 413 58.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 4.5e-107 392.5 406 63.5
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 7.6e-107 391.7 434 59.0
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.7e-106 390.6 455 60.7
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-105 387.9 462 58.7
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.1e-105 387.9 462 58.7
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.9e-105 387.1 437 60.4
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.4e-105 386.7 386 64.0
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 5.4e-105 385.6 425 60.0
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.6e-104 384.0 374 64.7
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 4.6e-104 382.5 459 58.6
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 6.0e-104 382.1 384 64.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.3e-103 380.9 442 60.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.8e-103 380.6 384 64.8
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 5.1e-103 379.0 372 67.5
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-102 376.3 443 60.3
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-102 376.3 432 60.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.3e-101 374.4 373 67.3
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.3e-101 374.4 373 67.3
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 2.8e-101 373.2 429 60.6
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.3e-98 364.4 417 57.1
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.4e-97 360.1 382 60.2
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.6e-96 357.5 301 65.4
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.7e-96 356.7 376 60.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.7e-96 356.7 257 74.3
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 8.7e-95 351.7 404 56.4
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 7.4e-94 348.6 330 64.8
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.7e-93 346.3 402 56.7
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 8.2e-93 345.1 329 68.1
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.2e-88 331.3 450 52.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.1e-86 324.7 417 53.2
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.9e-86 323.9 439 52.8
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 6.9e-84 315.5 256 66.8
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.8e-79 300.8 377 57.3
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.3e-71 273.9 199 74.4
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 5.3e-68 262.7 452 41.6
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.8e-66 256.5 225 65.8
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 2.6e-62 243.8 348 51.4
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.8e-60 237.7 275 59.3
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 2.1e-56 224.2 325 49.5
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.8e-55 221.1 342 46.2
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.7e-55 219.2 339 49.6
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.4e-52 210.7 313 48.2
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.1e-52 209.9 232 50.9
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 8.5e-50 202.2 135 80.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.6e-48 196.8 251 48.6
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.0e-43 181.0 237 56.1
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 5.7e-38 162.9 249 41.8
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 5.4e-36 156.4 116 70.7
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.1e-33 148.7 239 40.2
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 7.5e-30 136.0 77 93.5
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.0e-18 97.4 159 49.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.5e-17 95.1 60 78.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 8.6e-10 69.3 101 46.5
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.3e-09 67.0 109 39.4
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.1e-07 62.4 166 31.3
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 3.4e-06 57.4 130 32.3


User provided reference genes

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