Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 8.2e-293 1009.6 492 100.0
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 3.8e-237 824.7 494 83.2
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 2.5e-201 705.7 397 85.9
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 1.7e-165 586.6 491 60.5
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 6.5e-165 584.7 496 59.9
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 2.5e-164 582.8 499 59.9
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 7.2e-164 581.3 510 58.6
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 2.1e-163 579.7 492 59.6
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 1.8e-162 576.6 496 59.7
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 9.8e-161 570.9 519 57.0
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 2.2e-160 569.7 495 59.8
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 2.2e-160 569.7 480 60.4
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 2.8e-160 569.3 493 58.4
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 8.3e-160 567.8 496 58.9
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 1.1e-159 567.4 490 59.2
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 4.1e-159 565.5 489 59.3
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 5.4e-159 565.1 488 59.6
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 4.5e-158 562.0 495 59.2
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 1.3e-157 560.5 493 58.4
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 2.3e-157 559.7 495 57.6
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 2.3e-157 559.7 501 56.9
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 5.0e-157 558.5 488 58.8
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 8.6e-157 557.8 495 58.6
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 3.3e-156 555.8 496 57.3
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 7.2e-156 554.7 488 57.0
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 7.2e-156 554.7 491 58.5
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 2.1e-155 553.1 499 57.1
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 2.8e-155 552.7 482 58.1
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.2e-153 547.4 497 56.7
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.2e-153 547.4 497 58.4
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 2.8e-152 542.7 498 56.8
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 3.7e-152 542.3 496 56.0
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 4.9e-152 542.0 491 56.4
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 1.1e-151 540.8 491 57.0
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 1.8e-151 540.0 498 57.8
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 3.1e-151 539.3 492 57.5
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 3.9e-149 532.3 510 55.7
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 8.6e-149 531.2 499 54.3
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 4.3e-148 528.9 482 56.4
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 7.3e-148 528.1 492 55.9
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 1.2e-147 527.3 488 56.6
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 1.2e-147 527.3 486 56.6
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 4.7e-147 525.4 476 56.7
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 8.0e-147 524.6 478 55.2
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 1.4e-146 523.9 482 55.0
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 3.1e-146 522.7 493 54.8
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 2.0e-145 520.0 495 54.1
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.0e-145 520.0 493 54.8
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 2.6e-145 519.6 498 54.8
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 2.6e-145 519.6 488 55.1
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.4e-145 519.2 491 54.4
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 3.4e-145 519.2 502 54.4
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 4.4e-145 518.8 503 54.1
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 5.8e-145 518.5 491 54.4
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 1.7e-144 516.9 485 55.1
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 3.7e-144 515.8 504 54.6
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 8.3e-144 514.6 503 52.9
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 7.0e-143 511.5 487 54.6
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 7.0e-143 511.5 496 53.6
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 1.2e-142 510.8 498 53.8
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 4.6e-142 508.8 483 55.1
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 8.6e-141 504.6 500 54.6
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 2.5e-140 503.1 467 56.1
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 2.5e-140 503.1 485 53.8
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 5.6e-140 501.9 484 54.5
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 9.5e-140 501.1 490 52.0
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.6e-139 500.4 483 54.2
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 2.8e-139 499.6 499 51.5
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 4.0e-138 495.7 503 51.3
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 4.0e-138 495.7 469 56.1
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.5e-137 493.8 488 51.2
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 1.7e-136 490.3 430 57.4
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.4e-135 487.3 453 56.1
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.4e-135 486.5 514 51.9
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 9.2e-135 484.6 500 49.6
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 9.2e-135 484.6 504 50.6
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 2.1e-134 483.4 480 51.7
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 2.7e-134 483.0 491 49.9
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 2.7e-134 483.0 480 51.7
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 6.6e-133 478.4 503 52.1
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 4.3e-132 475.7 481 51.4
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 6.2e-131 471.9 400 60.5
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.7e-128 463.8 498 49.8
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 3.7e-128 462.6 413 57.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 5.4e-127 458.8 491 49.9
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 6.0e-126 455.3 493 50.5
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 6.6e-125 451.8 490 49.6
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 8.1e-123 444.9 485 48.0
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 1.8e-122 443.7 465 51.4
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 2.9e-120 436.4 425 53.9
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 8.7e-117 424.9 490 48.0
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 1.1e-116 424.5 594 42.1
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 1.1e-114 417.9 427 49.6
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 2.4e-114 416.8 506 45.1
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 9.9e-113 411.4 484 47.3
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.3e-112 411.0 478 47.3
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 3.8e-112 409.5 479 47.0
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 6.4e-112 408.7 425 50.1
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 8.4e-112 408.3 351 58.1
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 4.3e-108 396.0 399 51.6
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 2.2e-104 383.6 341 58.1
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 2.7e-102 376.7 697 35.6
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 2.8e-99 366.7 510 42.2
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 3.0e-93 346.7 331 53.2
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 5.7e-92 342.4 204 83.8
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 1.9e-87 327.4 471 41.6
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 2.7e-78 297.0 481 38.9
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 2.3e-77 293.9 293 53.6
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 1.2e-70 271.6 224 59.4
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 1.2e-70 271.6 443 40.2
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 2.5e-63 247.3 222 55.0
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.4e-61 241.5 279 48.4
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 8.8e-61 238.8 212 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 3.3e-60 236.9 298 44.0
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 7.0e-58 229.2 291 45.4
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 1.4e-50 204.9 395 36.2
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 1.1e-47 195.3 189 52.4
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 2.0e-41 174.5 158 57.0
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 1.3e-40 171.8 190 51.1
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 2.3e-40 171.0 287 37.6
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.9e-39 167.9 222 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.8e-37 161.4 385 32.7
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 1.7e-35 154.8 523 27.2
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 1.8e-34 151.4 281 34.5
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 2.4e-34 151.0 572 24.8
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.9e-24 117.1 97 56.7
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.9e-24 117.1 103 54.4
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.9e-23 114.8 99 54.5
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 2.5e-23 114.4 100 57.0
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.2e-22 109.8 97 54.6
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.8e-21 108.2 97 53.6
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.3e-16 91.3 72 56.9
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 8.1e-14 82.8 97 45.4
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 4.0e-13 80.5 62 61.3
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 5.2e-13 80.1 74 58.1
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.2e-12 79.0 64 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 9.9e-12 75.9 100 45.0
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 4.9e-11 73.6 284 25.7
SMO180G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.2e-09 68.9 308 25.3
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 2.7e-09 67.8 453 22.1
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 2.7e-09 67.8 325 24.6
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 2.3e-08 64.7 426 22.1
C02p08900 Brassica napus HOM05D005252 ORTHO05D032136 1.5e-07 62.0 132 33.3
BolC2t06799H Brassica oleracea HOM05D005252 ORTHO05D032136 1.5e-07 62.0 132 33.3
Pp3c1_8530 Physcomitrium patens HOM05D005416 ORTHO05D007956 1.5e-07 62.0 441 22.4
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 1.9e-07 61.6 422 24.4
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 4.3e-07 60.5 55 50.9
Pp3c24_9610 Physcomitrium patens HOM05D004224 ORTHO05D001113 5.6e-07 60.1 425 23.8
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 7.3e-07 59.7 50 52.0
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 7.3e-07 59.7 320 23.1
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 7.3e-07 59.7 440 21.6
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 9.6e-07 59.3 314 23.6
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 1.6e-06 58.5 317 24.0
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 2.8e-06 57.8 403 22.3
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 2.8e-06 57.8 422 23.9
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 3.6e-06 57.4 408 23.3
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 3.6e-06 57.4 322 22.0
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 3.6e-06 57.4 402 22.9
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 3.6e-06 57.4 303 22.8
Atru.chr11.944 Acer truncatum HOM05D005416 ORTHO05D007956 4.7e-06 57.0 454 22.9
Mapoly0108s0064 Marchantia polymorpha HOM05D005416 ORTHO05D007956 4.7e-06 57.0 277 26.0
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 6.2e-06 56.6 275 24.4
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 6.2e-06 56.6 284 24.6
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 8.1e-06 56.2 317 22.4
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 8.1e-06 56.2 282 24.1


User provided reference genes

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