Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 9.9e-101 370.2 192 100.0
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 6.4e-76 287.7 193 83.9
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.4e-76 287.3 193 83.9
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.4e-54 216.1 188 68.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.3e-25 119.8 208 45.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.2e-25 118.6 207 43.5
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.4e-24 115.9 196 44.4
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.8e-23 112.8 186 43.0
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.7e-23 112.5 211 39.3
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 4.8e-23 112.1 197 44.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.4e-22 108.6 185 43.8
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 7.0e-22 108.2 191 41.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 9.1e-22 107.8 191 43.5
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.2e-21 107.5 202 42.6
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.2e-21 107.5 188 43.1
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.6e-21 107.1 173 41.6
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.0e-21 106.7 200 42.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-21 106.7 178 42.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.0e-21 106.7 189 43.9
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 7.7e-21 104.8 205 40.0
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.7e-20 103.6 178 40.4
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.3e-20 103.2 210 42.9
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.3e-20 103.2 197 39.6
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.9e-20 102.8 192 40.6
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 3.8e-20 102.4 201 41.3
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 3.8e-20 102.4 187 41.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 8.6e-20 101.3 191 41.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.1e-19 100.9 179 39.7
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.1e-19 100.9 191 40.3
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-19 100.9 195 43.6
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-19 100.9 198 41.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.3e-19 99.4 195 42.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 4.2e-19 99.0 191 40.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 4.2e-19 99.0 203 40.4
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 4.2e-19 99.0 190 39.5
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 4.2e-19 99.0 209 37.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 4.2e-19 99.0 209 37.8
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 4.2e-19 99.0 139 48.9
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 7.2e-19 98.2 199 40.7
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.2e-19 98.2 195 43.1
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 7.2e-19 98.2 181 40.3
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-18 97.4 195 43.6
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.6e-18 97.1 181 39.2
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-18 97.1 170 41.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.8e-18 96.3 189 40.7
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.8e-18 96.3 180 38.3
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.6e-18 95.9 182 39.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 6.1e-18 95.1 191 40.8
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.0e-17 94.4 182 39.6
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.4e-17 94.0 211 37.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.8e-17 93.6 107 55.1
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.0e-17 92.4 235 38.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 6.8e-17 91.7 188 39.4
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.2e-16 90.9 84 66.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.2e-16 90.9 197 42.1
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.0e-16 90.1 210 39.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.0e-16 90.1 206 38.8
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.6e-16 89.7 192 40.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.8e-16 87.8 197 41.6
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.3e-15 87.4 190 38.4
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.3e-15 87.4 201 36.8
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.3e-15 87.4 197 37.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 2.2e-15 86.7 182 38.5
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.7e-15 85.9 196 39.3
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.7e-15 85.9 60 71.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 6.3e-15 85.1 179 37.4
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 6.3e-15 85.1 194 37.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 8.3e-15 84.7 183 36.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-14 84.3 179 38.0
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.1e-14 84.3 191 37.7
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.1e-14 84.3 177 34.5
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.1e-14 84.3 231 36.8
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.1e-14 84.3 191 38.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.4e-14 84.0 148 44.6
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.4e-14 84.0 203 38.4
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.4e-14 83.2 207 37.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.1e-14 82.8 195 38.5
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.1e-14 82.4 191 38.2
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 9.2e-14 81.3 192 35.9
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 9.2e-14 81.3 196 35.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.2e-13 80.9 93 53.8
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.2e-13 80.9 197 36.0
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.2e-13 80.9 200 33.5
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.2e-13 80.9 231 35.9
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.7e-13 79.7 199 34.7
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 4.5e-13 79.0 187 38.5
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 4.5e-13 79.0 187 38.5
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.5e-13 79.0 176 35.8
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 4.5e-13 79.0 210 35.7
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 5.9e-13 78.6 209 35.4
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.0e-12 77.8 186 36.0
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.3e-12 77.4 93 52.7
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.3e-12 77.4 232 37.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.8e-12 75.9 174 34.5
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 5.0e-12 75.5 80 55.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 5.0e-12 75.5 183 35.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.0e-12 75.5 176 36.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.0e-12 75.5 176 36.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 5.0e-12 75.5 194 37.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 8.6e-12 74.7 176 37.5
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.6e-12 74.7 82 51.2
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.1e-11 74.3 201 34.8
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.5e-11 73.9 95 51.6
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.5e-11 73.9 82 51.2
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-11 73.9 114 46.5
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-11 73.6 203 34.0
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.9e-11 73.6 193 37.3
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.9e-11 73.6 164 32.3
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.9e-11 73.6 193 33.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.5e-11 73.2 182 34.6
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.3e-11 72.8 197 36.0
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 3.3e-11 72.8 147 38.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.3e-11 72.4 82 50.0
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 5.6e-11 72.0 133 39.8
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 7.3e-11 71.6 207 35.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 9.5e-11 71.2 186 34.4
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.6e-10 70.5 192 32.8
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.1e-10 70.1 88 53.4
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.8e-10 69.7 147 38.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.8e-10 69.7 179 35.8
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.8e-10 69.7 203 33.5
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.8e-10 69.7 164 35.4
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.8e-10 69.7 177 35.0
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.1e-10 68.6 192 35.4
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 6.1e-10 68.6 205 37.1
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 6.1e-10 68.6 194 30.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 8.0e-10 68.2 207 34.3
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.4e-09 67.4 207 35.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.4e-09 67.4 148 37.2
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.8e-09 67.0 200 34.5
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 3.1e-09 66.2 207 37.7
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 8.9e-09 64.7 198 32.8
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.5e-08 63.9 158 36.7
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.0e-08 63.5 114 40.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 3.4e-08 62.8 198 32.3
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.4e-08 62.8 62 53.2
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.4e-08 62.4 164 32.9
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 4.4e-08 62.4 209 31.1
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 5.8e-08 62.0 88 42.0
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.8e-08 61.2 174 33.9
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 9.8e-08 61.2 189 36.0
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.3e-07 60.8 160 36.9
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.7e-07 60.5 70 50.0
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.7e-07 60.5 224 33.0
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 4.9e-07 58.9 78 46.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 2.4e-06 56.6 122 36.9
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 5.4e-06 55.5 87 47.1


User provided reference genes

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