Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.0e-116 423.3 203 100.0
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 1.6e-72 276.6 141 95.7
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 6.0e-72 274.6 141 95.0
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 1.0e-71 273.9 141 94.3
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 1.1e-68 263.8 141 90.1
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 1.4e-68 263.5 141 90.1
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 1.8e-68 263.1 141 89.4
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 1.5e-67 260.0 141 87.9
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 4.4e-67 258.5 141 87.9
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.8e-67 258.1 141 87.9
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.8e-67 258.1 141 87.9
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.8e-67 258.1 141 87.2
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.3e-66 256.9 141 87.2
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 2.2e-66 256.1 141 87.2
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 2.2e-66 256.1 141 86.5
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 2.2e-66 256.1 141 86.5
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 2.9e-66 255.8 141 87.2
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 2.9e-66 255.8 141 86.5
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 3.7e-66 255.4 141 88.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 4.9e-66 255.0 144 84.0
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 6.4e-66 254.6 141 85.8
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 6.4e-66 254.6 144 86.8
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 8.4e-66 254.2 141 85.8
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 8.4e-66 254.2 141 86.5
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 1.1e-65 253.8 141 85.1
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 1.1e-65 253.8 141 86.5
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 1.1e-65 253.8 141 85.1
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.9e-65 253.1 141 85.8
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 1.9e-65 253.1 141 85.1
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 2.4e-65 252.7 141 85.1
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.2e-65 252.3 141 85.8
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 3.2e-65 252.3 141 85.8
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 3.2e-65 252.3 141 87.2
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 3.2e-65 252.3 141 87.2
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 4.1e-65 251.9 141 85.1
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 5.4e-65 251.5 141 86.5
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 5.4e-65 251.5 135 89.6
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 5.4e-65 251.5 141 86.5
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 5.4e-65 251.5 141 83.7
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 5.4e-65 251.5 141 83.7
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 9.2e-65 250.8 144 84.7
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 9.2e-65 250.8 141 85.8
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 9.2e-65 250.8 141 85.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 9.2e-65 250.8 141 84.4
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 1.6e-64 250.0 141 85.1
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 1.6e-64 250.0 141 84.4
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 2.1e-64 249.6 141 84.4
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 2.1e-64 249.6 141 85.1
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 2.1e-64 249.6 141 84.4
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 2.1e-64 249.6 141 83.7
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 2.7e-64 249.2 141 84.4
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 2.7e-64 249.2 141 84.4
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 6.0e-64 248.1 141 86.5
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 6.0e-64 248.1 141 83.7
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 6.0e-64 248.1 141 83.7
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 7.8e-64 247.7 141 83.0
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 1.0e-63 247.3 141 85.1
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 1.0e-63 247.3 141 84.4
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 1.3e-63 246.9 141 84.4
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 1.3e-63 246.9 141 83.0
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 1.3e-63 246.9 163 74.8
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 1.7e-63 246.5 141 82.3
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 1.7e-63 246.5 141 83.7
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 2.3e-63 246.1 141 84.4
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 3.0e-63 245.7 141 82.3
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 3.0e-63 245.7 141 83.0
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 3.0e-63 245.7 141 82.3
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 3.0e-63 245.7 141 83.7
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 3.9e-63 245.4 141 81.6
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 3.9e-63 245.4 141 83.7
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 6.6e-63 244.6 141 81.6
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 6.6e-63 244.6 141 82.3
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 8.6e-63 244.2 141 81.6
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 1.1e-62 243.8 141 80.9
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 1.1e-62 243.8 141 80.9
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 1.1e-62 243.8 141 80.9
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 1.1e-62 243.8 141 80.9
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 1.5e-62 243.4 141 80.9
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 1.9e-62 243.0 149 77.2
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 1.9e-62 243.0 141 80.9
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 2.5e-62 242.7 141 79.4
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 2.5e-62 242.7 141 80.1
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 2.5e-62 242.7 141 80.1
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 2.5e-62 242.7 141 80.1
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 4.3e-62 241.9 141 80.9
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 5.6e-62 241.5 141 80.1
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 5.6e-62 241.5 141 80.9
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 7.3e-62 241.1 141 82.3
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 7.3e-62 241.1 141 82.3
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 4.7e-61 238.4 141 81.6
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 8.1e-61 237.7 141 82.3
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 8.1e-61 237.7 141 82.3
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 8.1e-61 237.7 135 85.9
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 1.4e-60 236.9 141 76.6
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 3.4e-59 232.3 137 82.5
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 9.3e-57 224.2 141 78.0
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.0e-55 220.7 141 78.0
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 7.3e-54 214.5 141 70.2
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 7.3e-54 214.5 141 70.9
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.6e-53 212.2 142 71.1
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 3.1e-52 209.1 141 70.2
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.2e-51 207.2 142 69.0
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 2.6e-51 206.1 141 69.5
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 4.9e-50 201.8 141 66.0
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 9.3e-49 197.6 108 86.1
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.2e-48 197.2 107 88.8
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 1.6e-48 196.8 180 57.2
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 6.0e-48 194.9 108 86.1
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.4e-44 183.7 141 61.0
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 2.5e-38 162.9 145 50.3
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 3.3e-38 162.5 144 52.1
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 1.6e-37 160.2 96 80.2
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 4.8e-37 158.7 145 53.8
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 9.0e-36 154.5 144 48.6
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 1.0e-34 151.0 144 47.9
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.2e-32 144.1 141 49.6
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 1.9e-25 120.2 66 81.8
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 2.7e-16 89.7 142 37.3
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 4.6e-16 89.0 151 35.1
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-15 84.7 93 45.2
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.4e-09 67.4 33 93.9
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 2.3e-07 60.1 73 42.5


User provided reference genes

Program Settings