Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 1.6e-71 272.7 144 100.0
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 2.1e-47 192.6 150 76.7
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 2.3e-46 189.1 153 75.8
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 1.3e-33 146.7 143 60.8
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 1.1e-22 110.5 135 47.4
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 3.1e-22 109.0 139 47.5
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 3.1e-22 109.0 130 50.8
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 1.2e-21 107.1 127 52.0
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 3.4e-21 105.5 138 42.8
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 3.8e-20 102.1 139 44.6
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 6.4e-20 101.3 103 55.3
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 1.4e-19 100.1 125 49.6
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 3.2e-19 99.0 143 46.9
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 4.2e-19 98.6 118 51.7
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 7.1e-19 97.8 132 42.4
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 1.6e-18 96.7 136 42.6
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.1e-18 96.3 147 44.9
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 1.0e-17 94.0 126 46.0
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 1.7e-17 93.2 153 44.4
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 3.0e-17 92.4 114 47.4
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 3.9e-17 92.0 104 48.1
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 5.1e-17 91.7 103 51.5
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 8.7e-17 90.9 96 50.0
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 8.7e-17 90.9 121 48.8
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 1.9e-16 89.7 139 41.0
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 5.6e-16 88.2 127 38.6
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 5.6e-16 88.2 124 41.9
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 5.6e-16 88.2 124 45.2
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 7.3e-16 87.8 131 42.0
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 9.6e-16 87.4 145 37.9
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 1.3e-15 87.0 129 41.9
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.6e-15 86.7 130 43.1
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 2.8e-15 85.9 127 37.0
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 1.1e-14 84.0 139 38.1
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 3.1e-14 82.4 78 56.4
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 3.1e-14 82.4 142 39.4
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 6.9e-14 81.3 126 43.7
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 9.0e-14 80.9 161 41.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 9.0e-14 80.9 126 42.1
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 1.2e-13 80.5 161 36.0
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 1.2e-13 80.5 135 41.5
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.5e-13 80.1 154 39.6
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 4.5e-13 78.6 130 40.8
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 2.2e-12 76.3 81 49.4
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 2.9e-12 75.9 104 46.2
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 8.4e-12 74.3 103 42.7
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.4e-11 73.6 117 39.3
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 3.2e-11 72.4 109 43.1
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 5.4e-11 71.6 78 47.4
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 7.1e-11 71.2 106 40.6
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 1.3e-09 67.0 123 39.0
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 1.1e-08 63.9 116 41.4
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 4.3e-08 62.0 102 37.3
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 5.6e-08 61.6 102 36.3
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 7.4e-08 61.2 76 46.1
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 9.6e-08 60.8 78 41.0
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 1.1e-06 57.4 68 45.6
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 5.3e-06 55.1 68 41.2
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 9.0e-06 54.3 126 31.0
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 9.0e-06 54.3 75 41.3
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 9.0e-06 54.3 39 59.0


User provided reference genes

Program Settings