Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 5.3e-176 621.3 411 100.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.1e-152 542.0 411 86.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.2e-149 531.9 417 84.4
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 9.1e-128 461.1 411 72.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.6e-108 396.0 412 63.3
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.4e-107 394.0 411 66.9
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.3e-107 393.3 412 62.4
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.0e-107 392.5 412 61.2
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.5e-106 390.6 416 59.4
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.7e-106 388.7 419 63.0
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 9.8e-106 387.9 427 56.4
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.3e-105 387.5 411 64.2
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.1e-104 384.4 410 61.2
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.1e-104 384.4 413 58.1
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 9.2e-104 381.3 413 62.2
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.7e-103 379.8 411 63.5
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.6e-103 379.0 415 64.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.0e-102 377.9 416 63.5
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.1e-101 374.4 411 63.3
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 5.6e-101 372.1 411 57.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 7.3e-101 371.7 411 60.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.0e-100 368.2 418 55.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.1e-99 366.3 412 53.9
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.2e-97 360.1 431 49.0
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.2e-96 356.3 414 63.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 4.1e-96 355.9 440 63.4
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 7.8e-95 351.7 416 53.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 7.8e-95 351.7 403 53.1
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 2.3e-94 350.1 422 53.3
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.0e-94 349.0 414 55.8
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 5.6e-93 345.5 412 63.3
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 9.5e-93 344.7 436 55.5
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.8e-92 343.2 417 52.5
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.4e-91 340.9 411 60.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.1e-91 339.7 411 51.6
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.2e-91 339.0 425 51.3
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.9e-91 338.2 417 48.4
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-90 337.4 419 57.5
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 2.2e-89 333.6 419 56.8
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.3e-89 331.6 413 46.0
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.5e-85 320.1 411 47.4
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 4.3e-85 319.3 436 53.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 7.3e-85 318.5 411 53.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.6e-82 310.1 412 53.9
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 5.8e-82 308.9 417 51.3
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 2.9e-81 306.6 416 52.2
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-80 304.3 425 56.2
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.9e-80 303.9 411 53.8
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.4e-80 303.5 422 54.5
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.6e-79 300.8 413 47.5
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.5e-79 299.7 411 49.4
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.0e-79 298.9 417 45.8
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-78 298.1 427 46.4
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-77 294.7 420 52.1
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.3e-77 293.1 413 52.3
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 9.6e-77 291.6 411 51.6
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.1e-75 286.6 412 43.9
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 6.8e-75 285.4 433 52.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.4e-72 277.7 411 54.5
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.9e-67 258.8 414 52.7
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-64 250.8 414 49.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-64 250.8 414 49.3
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.3e-62 243.8 414 48.1
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.5e-61 241.1 420 44.5
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 6.9e-59 232.3 415 46.5
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.7e-57 227.6 254 49.6
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.0e-54 216.9 345 48.1
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.9e-53 214.2 412 43.9
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.6e-53 212.6 478 43.7
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.2e-49 200.7 341 43.1
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 5.5e-48 196.1 304 40.8
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 8.7e-46 188.7 223 60.5
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.4e-43 181.4 155 56.1
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.0e-41 175.3 123 64.2
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.0e-41 172.9 123 61.0
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.9e-40 171.0 455 34.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.2e-40 170.2 162 53.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.5e-40 169.5 153 52.3
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.3e-40 168.7 155 51.0
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-39 168.3 132 57.6
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-39 168.3 132 57.6
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.2e-39 168.3 171 50.9
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.1e-39 167.5 162 51.9
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 3.5e-39 166.8 154 53.9
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.5e-39 166.8 166 50.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.1e-39 166.0 150 53.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.1e-39 166.0 150 53.3
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 6.1e-39 166.0 282 38.7
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 7.9e-39 165.6 155 51.6
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 7.9e-39 165.6 144 50.7
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.0e-38 165.2 157 52.2
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.8e-38 164.5 156 52.6
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.8e-38 164.5 156 52.6
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.3e-38 164.1 149 53.7
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.0e-38 163.7 156 51.9
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.0e-38 163.7 150 53.3
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.0e-38 163.7 282 38.3
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.9e-38 163.3 283 38.5
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 5.1e-38 162.9 154 51.3
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.7e-38 162.5 154 53.9
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 6.7e-38 162.5 125 57.6
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 6.7e-38 162.5 170 47.1
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 6.7e-38 162.5 146 52.7
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 8.7e-38 162.2 123 59.3
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 8.7e-38 162.2 157 51.6
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 8.7e-38 162.2 149 52.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.1e-37 161.8 142 52.8
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.1e-37 161.8 155 51.6
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-37 161.8 161 50.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.1e-37 161.8 145 51.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.1e-37 161.8 145 51.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.5e-37 161.4 123 59.3
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.9e-37 161.0 125 59.2
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.9e-37 161.0 154 52.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.9e-37 161.0 161 49.1
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.9e-37 161.0 291 36.1
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.9e-37 161.0 121 59.5
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.9e-37 161.0 131 56.5
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.9e-37 161.0 142 52.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.5e-37 160.6 122 59.0
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.3e-37 160.2 122 59.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 4.3e-37 159.8 426 35.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 4.3e-37 159.8 142 54.2
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 5.7e-37 159.5 130 55.4
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 7.4e-37 159.1 278 37.1
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 9.7e-37 158.7 123 58.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 9.7e-37 158.7 157 49.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.2e-36 157.5 125 56.8
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.2e-36 157.5 169 47.3
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.2e-36 157.5 279 36.2
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.2e-36 157.5 149 52.3
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.2e-36 157.5 264 37.1
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.7e-36 156.8 155 49.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 8.2e-36 155.6 188 45.2
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-35 154.8 270 35.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.8e-35 154.5 115 59.1
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.8e-35 154.5 343 37.9
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.4e-35 154.1 340 49.1
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 3.1e-35 153.7 263 38.8
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.1e-35 153.3 263 38.4
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 5.3e-35 152.9 124 54.0
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.3e-35 152.9 142 50.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.9e-35 152.5 263 38.4
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 9.0e-35 152.1 126 55.6
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.4e-34 150.2 137 50.4
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.4e-34 150.2 280 35.7
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 3.8e-33 146.7 100 64.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 6.1e-31 139.4 123 51.2
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 6.7e-30 136.0 102 59.8
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-29 135.2 122 50.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-29 134.8 102 59.8
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-29 134.8 102 59.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.7e-29 132.9 127 52.0
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 3.7e-28 130.2 103 55.3
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.2e-28 129.0 389 34.2
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 8.2e-28 129.0 181 60.2
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 5.0e-25 119.8 329 29.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.3e-22 110.9 110 54.5
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.2e-15 88.6 113 41.6
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.4e-11 75.1 43 81.4
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 4.0e-06 57.0 49 51.0


User provided reference genes

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