Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 8.1e-75 285.4 142 100.0
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 1.2e-67 261.5 139 91.4
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 2.1e-54 217.6 139 75.5
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 2.4e-50 204.1 142 66.9
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 4.6e-46 189.9 140 65.7
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 4.6e-46 189.9 140 65.7
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 3.0e-45 187.2 142 62.7
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 2.5e-44 184.1 142 59.9
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 3.3e-44 183.7 141 61.7
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 1.6e-43 181.4 139 61.2
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 4.8e-43 179.9 142 58.5
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 8.2e-43 179.1 142 60.6
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.1e-42 178.7 142 57.7
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 1.8e-42 177.9 143 58.7
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 4.0e-42 176.8 142 59.9
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 4.0e-42 176.8 124 67.7
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 5.3e-42 176.4 142 59.2
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 9.0e-42 175.6 142 58.5
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 9.0e-42 175.6 140 65.0
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 1.2e-41 175.3 142 59.2
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 1.2e-41 175.3 126 65.1
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 2.6e-41 174.1 142 59.9
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 2.6e-41 174.1 142 59.9
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 4.5e-41 173.3 142 58.5
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 1.0e-40 172.2 142 58.5
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 1.0e-40 172.2 129 62.8
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 1.0e-40 172.2 142 57.7
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 1.7e-40 171.4 124 63.7
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 6.5e-40 169.5 125 62.4
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 1.1e-39 168.7 142 54.9
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 2.1e-38 164.5 141 52.5
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 3.5e-38 163.7 143 56.6
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 6.0e-38 162.9 125 61.6
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 6.0e-38 162.9 143 55.9
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 1.0e-37 162.2 146 52.7
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 1.3e-37 161.8 139 51.1
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 5.1e-37 159.8 145 55.2
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 8.7e-37 159.1 142 54.9
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 2.5e-36 157.5 142 52.8
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 2.5e-36 157.5 142 54.9
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 5.7e-36 156.4 142 49.3
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 2.4e-34 151.0 145 51.0
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.2e-33 148.7 145 51.0
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 1.2e-33 148.7 148 48.6
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 4.5e-33 146.7 148 49.3
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 7.7e-33 146.0 146 49.3
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 1.0e-32 145.6 142 47.9
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 2.9e-32 144.1 142 49.3
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 2.9e-32 144.1 146 49.3
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 3.8e-32 143.7 147 48.3
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 8.5e-32 142.5 132 50.8
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 3.2e-31 140.6 141 49.6
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 5.5e-31 139.8 150 48.0
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 7.2e-31 139.4 147 47.6
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 9.4e-31 139.0 147 46.3
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 1.2e-30 138.7 135 49.6
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 2.7e-30 137.5 142 46.5
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 4.6e-30 136.7 134 47.0
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 6.1e-30 136.3 142 48.6
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 6.1e-30 136.3 138 47.8
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 1.4e-29 135.2 133 54.1
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 1.4e-29 135.2 147 47.6
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.8e-29 134.8 135 47.4
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.0e-29 134.0 135 46.7
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 5.1e-29 133.3 140 45.0
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 8.8e-29 132.5 135 46.7
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 1.1e-28 132.1 129 49.6
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 2.0e-28 131.3 144 45.1
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 2.0e-28 131.3 146 46.6
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 2.5e-28 131.0 137 46.7
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 3.3e-28 130.6 135 45.2
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 7.4e-28 129.4 137 46.0
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 1.7e-27 128.3 142 45.8
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 8.2e-27 125.9 133 44.4
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 1.4e-26 125.2 121 49.6
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.4e-26 124.4 142 45.1
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 5.3e-26 123.2 89 61.8
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 9.1e-26 122.5 117 50.4
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.2e-25 122.1 145 41.4
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 1.5e-25 121.7 144 43.8
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 2.0e-25 121.3 140 42.9
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 2.6e-25 120.9 137 46.7
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 5.9e-25 119.8 144 42.4
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 7.2e-23 112.8 129 42.6
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 2.8e-19 100.9 142 40.8
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 1.0e-13 82.4 93 43.0
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 8.8e-13 79.3 127 33.1
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 7.4e-12 76.3 142 28.2
CsaV3_3G017850 Cucumis sativus L. HOM05D007545 ORTHO05D009579 6.3e-11 73.2 42 88.1
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 8.2e-11 72.8 142 28.2
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 8.2e-11 72.8 142 28.2
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 4.1e-10 70.5 50 60.0
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 5.3e-10 70.1 142 28.9
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 9.1e-10 69.3 135 31.1
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 2.0e-09 68.2 125 32.8
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 3.5e-09 67.4 129 31.8
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 1.3e-08 65.5 140 24.3
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.7e-08 65.1 90 34.4
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 2.2e-08 64.7 138 26.1
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 2.9e-08 64.3 106 32.1
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 3.8e-08 63.9 107 33.6
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 6.5e-08 63.2 133 31.6
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 8.5e-08 62.8 130 27.7
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.1e-07 62.4 142 26.1
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 1.5e-07 62.0 120 28.3
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 1.5e-07 62.0 130 24.6
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 1.9e-07 61.6 106 33.0
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 2.5e-07 61.2 138 28.3
Nitab4.5_0005124g0010 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.5e-07 61.2 50 48.0
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 2.5e-07 61.2 140 25.7
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 4.2e-07 60.5 110 30.9
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.2e-07 60.5 111 32.4
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 5.5e-07 60.1 136 27.2
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 7.2e-07 59.7 129 31.0
Cc10_g12620 Coffea canephora HOM05D007496 ORTHO05D009479 7.2e-07 59.7 134 26.1
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 9.4e-07 59.3 129 32.6
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.2e-06 58.9 133 24.8
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 1.2e-06 58.9 133 24.8
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.1e-06 58.2 93 30.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.1e-06 58.2 152 27.6
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 2.1e-06 58.2 129 26.4
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.7e-06 57.8 154 26.6
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 3.6e-06 57.4 106 28.3
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.6e-06 57.4 119 27.7
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 4.7e-06 57.0 93 25.8
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 4.7e-06 57.0 126 27.0
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 4.7e-06 57.0 93 26.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 4.7e-06 57.0 142 27.5
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 6.1e-06 56.6 127 26.0
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 8.0e-06 56.2 115 27.0
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 8.0e-06 56.2 93 28.0
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 8.0e-06 56.2 143 24.5


User provided reference genes

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