Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 3.6e-72 275.0 162 100.0
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 9.3e-60 233.8 156 92.3
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 3.2e-52 208.8 156 85.9
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 2.2e-48 196.1 157 83.4
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 3.6e-35 152.1 84 85.7
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 1.0e-34 150.6 84 84.5
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 2.3e-34 149.4 84 83.3
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 2.3e-34 149.4 89 78.7
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 3.9e-34 148.7 84 83.3
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 5.1e-34 148.3 84 83.3
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 1.5e-33 146.7 81 84.0
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 2.0e-33 146.4 89 77.5
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 2.6e-33 146.0 84 81.0
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 3.3e-33 145.6 81 86.4
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 5.7e-33 144.8 84 79.8
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 5.7e-33 144.8 84 79.8
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 5.7e-33 144.8 84 82.1
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 9.7e-33 144.1 83 81.9
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 1.7e-32 143.3 79 81.0
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 2.8e-32 142.5 81 81.5
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 3.7e-32 142.1 86 76.7
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 3.7e-32 142.1 87 81.6
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 4.8e-32 141.7 74 86.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 4.8e-32 141.7 85 77.6
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 4.8e-32 141.7 85 77.6
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 8.2e-32 141.0 85 76.5
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 1.1e-31 140.6 86 77.9
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 1.4e-31 140.2 84 78.6
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 1.4e-31 140.2 85 77.6
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 2.4e-31 139.4 84 78.6
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 2.4e-31 139.4 83 84.3
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 7.0e-31 137.9 85 74.1
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 7.0e-31 137.9 81 77.8
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 9.1e-31 137.5 81 80.2
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 1.6e-30 136.7 85 77.6
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 2.6e-30 136.0 87 72.4
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 4.5e-30 135.2 84 77.4
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 7.7e-30 134.4 83 77.1
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 2.2e-29 132.9 83 75.9
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 2.9e-29 132.5 84 71.4
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 2.9e-29 132.5 86 72.1
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 3.8e-29 132.1 81 77.8
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 3.8e-29 132.1 86 70.9
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 3.8e-29 132.1 86 70.9
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 5.0e-29 131.7 84 76.2
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 6.5e-29 131.3 83 74.7
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 1.5e-28 130.2 81 75.3
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 5.5e-28 128.3 89 74.2
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.2e-27 127.1 93 69.9
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 1.6e-27 126.7 93 68.8
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 1.8e-26 123.2 86 69.8
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 2.3e-26 122.9 91 69.2
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 4.0e-26 122.1 78 76.9
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 5.2e-26 121.7 92 66.3
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 2.0e-25 119.8 82 73.2
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 3.3e-25 119.0 82 70.7
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 9.7e-25 117.5 90 65.6
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.3e-24 117.1 81 71.6
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.3e-24 117.1 81 71.6
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.3e-24 117.1 81 71.6
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.3e-24 117.1 81 71.6
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 1.3e-24 117.1 81 71.6
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 1.7e-24 116.7 81 74.1
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 2.2e-24 116.3 80 73.8
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 2.8e-24 115.9 81 70.4
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 6.3e-24 114.8 81 70.4
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 6.3e-24 114.8 81 70.4
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 8.2e-24 114.4 81 70.4
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 1.1e-23 114.0 81 69.1
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 1.1e-23 114.0 81 69.1
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.8e-23 113.2 66 77.3
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.8e-23 113.2 66 77.3
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 2.4e-23 112.8 81 70.4
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 3.1e-23 112.5 81 69.1
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 1.2e-22 110.5 80 68.8
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 3.5e-22 109.0 82 67.1
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 3.5e-22 109.0 82 65.9
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 5.9e-22 108.2 82 65.9
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 7.7e-22 107.8 93 65.6
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 1.0e-21 107.5 93 65.6
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 1.3e-21 107.1 74 68.9
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 1.7e-21 106.7 83 61.4
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 2.9e-21 105.9 74 68.9
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 5.0e-21 105.1 69 69.6
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 6.5e-21 104.8 70 67.1
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 1.5e-20 103.6 76 73.7
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 2.1e-19 99.8 70 70.0
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 1.0e-18 97.4 64 73.4
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 3.0e-18 95.9 64 73.4
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 4.0e-18 95.5 80 60.0
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 6.8e-18 94.7 84 52.4
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.2e-17 94.0 78 59.0
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 3.4e-17 92.4 66 74.2
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 1.4e-15 87.0 83 56.6
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 2.4e-15 86.3 71 59.2
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 7.0e-15 84.7 89 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 9.1e-15 84.3 83 57.8
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 9.1e-15 84.3 70 58.6
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 7.7e-14 81.3 60 71.7
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 3.8e-13 79.0 75 57.3
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 1.1e-12 77.4 69 60.9
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 7.2e-12 74.7 84 44.0
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 1.8e-10 70.1 49 67.3
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 8.8e-10 67.8 116 37.1
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 4.4e-09 65.5 98 45.9


User provided reference genes

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