Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 3.2e-245 851.3 419 100.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.2e-231 806.2 419 93.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 6.5e-230 800.4 419 92.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.7e-206 722.6 418 82.5
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.2e-205 718.0 417 81.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-204 716.5 418 81.3
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.7e-204 714.5 418 82.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.0e-203 713.4 417 81.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-203 712.6 419 80.0
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.2e-203 711.1 417 80.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.5e-202 709.5 440 77.7
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.0e-202 709.1 419 79.2
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-202 709.1 418 80.6
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.0e-202 709.1 416 80.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.6e-202 708.8 419 79.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 2.6e-202 708.8 418 80.6
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.7e-202 707.6 418 80.6
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.3e-201 706.4 416 79.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.8e-201 705.3 439 78.8
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.8e-201 705.3 419 79.5
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 4.8e-201 704.5 418 79.9
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 8.2e-201 703.7 417 80.6
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.4e-200 703.0 435 78.4
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.8e-200 702.6 414 80.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 5.3e-200 701.0 416 79.8
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.0e-200 700.7 418 78.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.1e-200 700.3 418 79.9
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.0e-199 699.1 417 78.9
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.0e-199 699.1 419 80.4
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.6e-199 698.7 418 78.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.6e-199 698.7 417 79.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.6e-199 698.7 419 78.8
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 2.6e-199 698.7 419 79.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.5e-199 698.4 416 79.8
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.9e-199 697.6 417 78.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 5.9e-199 697.6 419 80.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.9e-199 697.6 414 79.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 79.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.0e-198 696.8 414 79.2
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.8e-198 694.9 417 79.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 3.8e-198 694.9 415 79.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 3.8e-198 694.9 414 79.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 3.8e-198 694.9 414 79.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.0e-198 694.5 416 78.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 5.0e-198 694.5 416 79.8
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-197 693.3 419 77.8
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.5e-197 693.0 419 80.0
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.5e-197 693.0 419 78.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 3.2e-197 691.8 418 78.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 4.2e-197 691.4 419 78.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 78.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.6e-196 688.3 416 78.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 3.6e-196 688.3 361 92.0
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.1e-196 687.6 434 77.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 8.0e-196 687.2 417 77.9
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 8.0e-196 687.2 419 78.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.0e-195 686.8 416 76.7
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-195 686.4 416 77.6
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.4e-195 686.4 415 78.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 76.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.8e-195 686.0 421 77.7
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.3e-195 685.6 416 76.7
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.3e-195 685.6 419 78.3
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.0e-195 685.3 419 77.6
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 76.4
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 76.4
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.7e-195 684.1 435 76.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.2e-194 683.3 417 77.9
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.5e-194 682.9 418 77.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 77.4
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.4e-194 681.4 412 79.1
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.4e-194 681.4 417 76.5
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 77.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 7.5e-194 680.6 417 77.0
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 9.7e-194 680.2 416 76.4
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 9.7e-194 680.2 412 77.9
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 419 76.8
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.7e-193 678.3 415 76.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.7e-193 678.3 418 76.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.8e-192 676.0 416 76.0
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 76.2
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 3.1e-192 675.2 417 76.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 75.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 5.3e-192 674.5 418 76.8
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 9.1e-192 673.7 414 76.8
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 9.1e-192 673.7 417 76.3
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.1e-192 673.7 435 74.7
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.6e-191 672.9 415 77.1
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.0e-191 672.5 417 75.5
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.0e-191 672.5 418 76.3
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.7e-191 672.2 416 74.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 3.5e-191 671.8 416 76.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 7.7e-191 670.6 418 76.1
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.0e-190 670.2 435 74.7
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.0e-190 670.2 418 76.6
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.3e-190 669.8 416 75.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 5.0e-190 667.9 418 76.1
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 6.5e-190 667.5 416 76.0
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.5e-189 665.6 431 74.5
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.2e-189 665.2 418 77.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 7.2e-189 664.1 416 76.0
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.1e-188 661.0 417 76.0
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-187 660.2 449 71.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.5e-186 656.4 416 74.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.6e-186 655.6 418 74.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 5.7e-186 654.4 412 75.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.7e-185 652.9 457 69.4
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 2.2e-185 652.5 412 75.2
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.1e-184 650.2 406 77.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-184 648.7 416 74.0
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.5e-183 645.2 406 74.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 7.7e-183 644.0 421 73.9
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.9e-182 642.1 412 75.2
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 5.0e-182 641.3 414 72.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.1e-181 640.2 414 72.0
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.5e-181 639.8 417 74.6
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.5e-181 639.8 419 74.2
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.5e-181 639.0 412 72.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.2e-181 638.3 411 73.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.6e-180 636.3 417 73.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 4.7e-180 634.8 417 74.1
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 4.0e-179 631.7 407 73.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.0e-178 629.4 417 71.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.7e-177 626.3 497 62.4
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.2e-177 625.9 420 71.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.9e-175 617.8 360 80.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.8e-174 615.1 371 78.4
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.6e-173 611.3 413 70.5
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.1e-172 609.4 416 70.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.2e-170 603.6 421 67.7
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.3e-169 597.4 411 68.6
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 6.6e-166 587.8 416 69.2
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.5e-165 585.9 363 75.8
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.0e-162 576.2 341 78.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.4e-160 570.1 341 78.0
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 3.0e-158 562.4 413 63.9
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.9e-152 543.1 416 62.5
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.3e-150 537.0 434 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 5.6e-149 531.6 410 61.7
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 8.1e-148 527.7 411 60.3
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 4.7e-140 501.9 413 59.6
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.7e-137 493.4 301 79.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.4e-131 473.0 427 53.2
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-127 460.3 342 64.6
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-123 446.8 317 68.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-120 436.8 302 72.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.8e-108 395.6 222 83.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-106 391.0 291 65.6
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.4e-104 384.0 498 41.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.7e-103 379.8 416 46.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.6e-103 379.4 406 48.5
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-100 370.2 235 74.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.4e-99 366.7 427 46.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.8e-94 348.2 200 81.0
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.7e-92 344.0 200 80.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.0e-89 334.7 244 66.4
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.0e-78 298.1 221 67.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-70 271.6 226 63.7
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 6.3e-68 262.3 174 70.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.5e-64 251.1 258 53.1
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.2e-62 242.7 160 71.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.2e-62 242.7 180 68.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 7.5e-61 238.8 155 71.6
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-56 224.6 151 72.8
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.3e-54 217.2 229 50.2
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.2e-54 216.1 181 60.2
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.4e-53 213.4 128 78.1
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-50 204.9 121 75.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.6e-50 204.5 118 79.7
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.5e-50 203.4 337 38.6
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.5e-48 198.0 127 74.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.1e-47 194.1 343 37.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.4e-38 164.9 124 60.5
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.1e-35 153.3 95 72.6
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 4.7e-31 139.8 88 75.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.9e-29 132.1 126 55.6
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 7.1e-27 125.9 66 81.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.3e-24 115.9 71 74.6
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.3e-17 95.1 86 52.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.1e-16 92.0 86 51.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.4e-14 85.1 57 66.7
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.5e-10 70.5 59 61.0
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 5.1e-09 66.6 58 53.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.9e-08 64.7 302 23.5
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 9.6e-08 62.4 35 71.4


User provided reference genes

Program Settings