Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 3931.7 1970 100.0
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 3494.1 1972 89.8
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 3400.9 1905 90.2
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 3237.2 1977 83.3
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2000.3 2070 54.1
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1998.0 2038 55.4
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1936.0 2046 53.9
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1931.0 2037 53.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1924.1 2031 54.1
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1921.7 2026 54.1
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1914.4 2041 52.8
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1906.3 2030 53.8
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1902.5 2038 52.3
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1899.8 2007 53.9
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1895.6 2030 52.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1890.2 2042 52.9
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1890.2 2034 53.2
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1887.5 2030 53.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1878.2 2009 52.5
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1869.0 2034 51.1
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1865.9 2027 53.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1864.0 2031 51.9
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1862.4 2033 52.0
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1852.4 2031 51.9
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1850.9 2033 51.2
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1842.0 2029 52.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1841.6 2071 51.2
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1823.5 2052 51.5
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1821.2 2042 50.3
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1815.4 2059 50.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1813.9 2047 51.6
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1812.3 2063 50.3
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1810.0 2015 51.6
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1777.7 2028 50.2
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1776.9 2038 50.3
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1755.7 2042 49.7
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1750.7 2048 48.7
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1748.4 2038 50.3
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1736.1 2054 49.9
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1735.3 2042 48.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1731.8 2055 49.1
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1710.7 2045 48.5
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1709.9 2022 48.9
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1702.6 2030 48.4
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1699.5 2045 48.9
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1693.3 2046 48.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1682.5 2026 48.1
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1673.3 2028 47.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1670.6 2036 49.1
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 2030 47.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1653.3 2047 47.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1586.6 2011 46.7
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1581.6 2056 45.5
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1578.5 2029 45.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1570.4 2033 46.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1562.0 2028 44.9
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1560.0 2029 45.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1559.3 2027 46.0
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1556.6 2023 45.9
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1553.5 2014 46.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1546.9 2016 45.0
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1536.2 2019 45.2
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1534.2 2034 45.3
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1532.3 2013 44.8
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1522.7 2003 45.9
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1521.1 2090 45.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1520.0 2009 45.4
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1517.7 2014 45.3
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1517.3 1978 46.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1512.7 2011 45.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1509.6 2089 43.8
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1503.8 2019 44.9
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1496.5 1726 50.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1495.3 1949 45.5
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1494.6 2019 44.9
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 2015 44.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1489.9 2015 44.7
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1489.9 2016 44.6
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1480.3 1727 50.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1475.3 2015 43.8
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1459.1 2140 42.0
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1454.1 2043 43.5
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1452.2 1967 44.7
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1450.6 2001 43.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1445.3 1997 43.5
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1427.9 1957 44.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1393.3 1958 42.9
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1381.7 2030 43.0
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1351.7 1483 51.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1335.1 1476 50.9
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1328.2 1800 44.2
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1260.7 2096 39.8
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1255.7 2023 40.1
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1161.7 1741 42.0
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 2.0e-310 1070.1 2030 34.9
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 9.9e-305 1051.2 1697 39.7
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 9.3e-295 1018.1 1200 49.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 1.1e-282 978.0 2157 32.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.3e-258 896.0 1668 35.6
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 9.1e-250 868.6 1492 36.4
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 6.3e-227 792.7 2186 30.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.7e-200 704.9 1992 30.5
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 1.2e-198 698.7 2108 29.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 3.9e-184 650.6 699 54.5
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.1e-158 565.1 1883 27.7
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-151 542.0 1169 32.9
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.5e-143 515.0 1748 27.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.5e-140 504.2 456 59.2
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.5e-132 479.2 427 58.3
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 8.0e-121 440.3 364 64.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.0e-120 439.9 279 80.6
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.1e-114 419.9 411 53.8
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.6e-105 388.3 276 70.3
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.7e-105 387.9 441 49.2
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.6e-103 382.1 1117 29.7
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.0e-99 367.9 385 54.0
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.3e-80 305.8 198 76.3
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 3.1e-72 278.9 507 38.7
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 2.8e-65 255.8 397 40.8
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 2.0e-63 249.6 245 56.7
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.9e-54 218.4 184 60.9
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.1e-50 207.2 182 59.9
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.3e-50 205.7 215 50.2
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 8.4e-38 164.5 393 32.1
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.6e-36 160.2 174 52.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.1e-32 145.6 332 30.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-31 141.7 611 24.4
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.1e-29 137.5 83 77.1
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 7.4e-26 124.8 108 66.7
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.5e-23 115.5 67 77.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.3e-22 114.0 67 76.1
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 3.8e-22 112.5 343 26.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 2.7e-20 106.3 64 76.6
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 7.9e-20 104.8 243 31.7
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 8.8e-19 101.3 288 26.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.1e-18 100.9 123 45.5
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-18 99.0 100 46.0
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.3e-17 97.4 66 68.2
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.8e-16 93.6 68 72.1
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.8e-14 85.9 98 50.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.5e-13 83.2 56 73.2
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.6e-10 73.2 55 63.6
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 8.2e-09 68.2 152 32.9
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 8.5e-06 58.2 46 56.5


User provided reference genes

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