Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 2.1e-80 302.4 160 100.0
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 9.0e-23 110.9 115 58.3
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 7.6e-22 107.8 115 56.5
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 4.2e-20 102.1 123 50.4
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 4.2e-20 102.1 123 51.2
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 5.5e-20 101.7 115 54.8
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 5.5e-20 101.7 115 54.8
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 5.5e-20 101.7 115 54.8
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.1e-19 99.8 115 53.9
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 2.1e-19 99.8 115 53.9
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 2.7e-19 99.4 123 49.6
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.7e-19 99.4 123 49.6
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.7e-19 99.4 129 49.6
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 4.6e-19 98.6 115 53.0
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 6.0e-19 98.2 115 52.2
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 7.9e-19 97.8 115 52.2
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 1.0e-18 97.4 115 51.3
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 1.3e-18 97.1 115 53.0
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.3e-18 97.1 115 53.0
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 1.3e-18 97.1 123 48.8
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 2.3e-18 96.3 138 44.2
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 2.3e-18 96.3 115 51.3
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 3.0e-18 95.9 116 53.4
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 5.1e-18 95.1 115 51.3
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 5.1e-18 95.1 115 52.2
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 1.9e-17 93.2 117 51.3
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.5e-17 92.8 114 50.9
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.5e-17 92.8 115 51.3
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 3.3e-17 92.4 116 48.3
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 4.3e-17 92.0 116 50.9
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 4.3e-17 92.0 116 50.0
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 4.3e-17 92.0 116 49.1
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 9.6e-17 90.9 115 48.7
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 1.3e-16 90.5 116 51.7
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 1.3e-16 90.5 115 50.4
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.6e-16 90.1 115 50.4
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 2.1e-16 89.7 114 51.8
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 2.8e-16 89.4 115 48.7
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 3.7e-16 89.0 115 47.0
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 3.7e-16 89.0 115 48.7
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 4.8e-16 88.6 138 42.8
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 4.8e-16 88.6 115 47.8
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 6.2e-16 88.2 116 49.1
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 6.2e-16 88.2 117 48.7
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 6.2e-16 88.2 117 48.7
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 8.2e-16 87.8 115 45.2
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 1.4e-15 87.0 115 47.8
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 1.8e-15 86.7 115 47.8
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 2.4e-15 86.3 115 47.0
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 3.1e-15 85.9 116 46.6
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 4.0e-15 85.5 115 47.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.3e-15 85.1 115 47.8
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 6.9e-15 84.7 115 47.0
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.2e-14 84.0 115 46.1
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.5e-14 83.6 115 47.0
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.5e-14 83.6 115 47.0
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 1.5e-14 83.6 120 48.3
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 5.8e-14 81.6 115 44.3
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 7.6e-14 81.3 116 44.0
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.3e-13 80.5 155 38.7
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.3e-13 80.5 114 42.1
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 4.9e-13 78.6 129 39.5
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 4.9e-13 78.6 115 43.5
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 1.4e-12 77.0 115 43.5
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.9e-12 76.6 115 45.2
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.5e-12 76.3 51 80.4
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 2.5e-12 76.3 116 44.8
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 3.2e-12 75.9 113 40.7
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 9.3e-12 74.3 48 79.2
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.6e-11 73.6 94 48.9
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 2.1e-11 73.2 48 77.1
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 4.6e-11 72.0 116 43.1
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 4.6e-11 72.0 94 48.9
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 6.1e-11 71.6 116 43.1
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 6.1e-11 71.6 116 42.2
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 6.1e-11 71.6 116 42.2
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 1.3e-10 70.5 116 42.2
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 3.0e-10 69.3 116 41.4
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 6.7e-10 68.2 116 41.4
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 6.7e-10 68.2 116 40.5
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 6.7e-10 68.2 113 38.9
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 1.1e-09 67.4 116 40.5
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 1.1e-09 67.4 116 40.5
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.1e-09 67.4 56 62.5
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.5e-09 67.0 116 39.7
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 1.9e-09 66.6 113 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 3.3e-09 65.9 120 38.3
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 2.2e-08 63.2 135 37.0
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 2.8e-08 62.8 106 38.7
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 4.8e-08 62.0 92 43.5
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 1.4e-07 60.5 92 42.4
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 2.4e-07 59.7 93 40.9
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 1.2e-06 57.4 92 41.3
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 2.6e-06 56.2 89 42.7
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 4.5e-06 55.5 87 43.7
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 4.5e-06 55.5 48 60.4
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 4.5e-06 55.5 87 42.5
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 5.9e-06 55.1 93 43.0
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 7.7e-06 54.7 86 41.9


User provided reference genes

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