Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 4.4e-109 397.9 189 100.0
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.4e-43 180.3 189 55.6
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.9e-32 143.3 113 66.4
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-31 140.6 104 65.4
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.1e-31 139.8 110 64.5
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.4e-30 137.1 124 54.8
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.4e-30 136.3 104 61.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 3.1e-30 136.0 93 68.8
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.1e-30 136.0 95 65.3
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 3.1e-30 136.0 93 71.0
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 4.0e-30 135.6 93 69.9
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 4.0e-30 135.6 93 68.8
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 4.0e-30 135.6 116 58.6
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 5.3e-30 135.2 98 65.3
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 5.3e-30 135.2 93 67.7
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.2e-29 134.0 96 66.7
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-29 134.0 93 67.7
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.2e-29 134.0 108 62.0
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.2e-29 134.0 93 66.7
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.2e-29 134.0 93 66.7
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.2e-29 134.0 93 68.8
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.2e-29 134.0 94 66.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.0e-29 133.3 96 64.6
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.6e-29 132.9 112 59.8
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.6e-29 132.9 93 67.7
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 4.5e-29 132.1 95 66.3
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.8e-29 131.7 92 65.2
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 5.8e-29 131.7 93 67.7
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 5.8e-29 131.7 93 65.6
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 7.6e-29 131.3 94 67.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 7.6e-29 131.3 94 67.0
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 7.6e-29 131.3 94 67.0
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 7.6e-29 131.3 92 66.3
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 9.9e-29 131.0 94 67.0
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 9.9e-29 131.0 95 66.3
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 9.9e-29 131.0 95 66.3
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 9.9e-29 131.0 102 62.7
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.3e-28 130.6 93 66.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.7e-28 130.2 93 67.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.7e-28 130.2 93 66.7
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 1.7e-28 130.2 93 63.4
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.2e-28 129.8 93 65.6
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.2e-28 129.8 93 66.7
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.2e-28 129.8 105 61.0
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.9e-28 129.4 93 66.7
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.9e-28 129.4 94 66.0
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 2.9e-28 129.4 93 66.7
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.9e-28 129.4 93 66.7
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.8e-28 129.0 93 64.5
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.8e-28 129.0 93 66.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.9e-28 128.6 93 66.7
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.9e-28 128.6 94 63.8
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 6.4e-28 128.3 94 66.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 6.4e-28 128.3 104 58.7
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 6.4e-28 128.3 93 64.5
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 8.4e-28 127.9 93 64.5
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-27 127.5 96 64.6
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.1e-27 127.5 99 61.6
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 1.1e-27 127.5 93 64.5
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.4e-27 127.1 93 64.5
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.9e-27 126.7 93 65.6
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.9e-27 126.7 93 64.5
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.9e-27 126.7 93 64.5
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.4e-27 126.3 93 63.4
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.4e-27 126.3 93 64.5
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.4e-27 126.3 93 62.4
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 3.2e-27 125.9 93 65.6
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 3.2e-27 125.9 93 65.6
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.2e-27 125.9 93 64.5
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.2e-27 125.9 93 63.4
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 3.2e-27 125.9 96 62.5
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 4.2e-27 125.6 93 64.5
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.2e-26 124.0 93 63.4
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 2.1e-26 123.2 94 63.8
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.1e-26 123.2 93 63.4
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 3.5e-26 122.5 93 64.5
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 4.6e-26 122.1 95 60.0
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.0e-26 121.7 93 61.3
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 6.0e-26 121.7 98 60.2
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 7.9e-26 121.3 109 54.1
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-25 120.9 94 60.6
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.0e-25 120.9 93 62.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 1.0e-25 120.9 93 60.2
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 1.3e-25 120.6 100 61.0
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-25 120.6 93 60.2
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.3e-25 120.6 93 60.2
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-25 120.2 95 60.0
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.3e-25 119.8 95 56.8
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.3e-25 119.8 93 61.3
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.3e-25 119.8 93 61.3
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.3e-25 119.8 93 61.3
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.3e-25 119.8 93 60.2
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.0e-25 119.4 93 60.2
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 3.9e-25 119.0 93 60.2
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.9e-25 119.0 96 56.2
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.1e-25 118.6 94 61.7
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.1e-25 118.6 94 61.7
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 6.7e-25 118.2 92 62.0
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.7e-25 118.2 97 58.8
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.7e-25 117.9 93 60.2
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-24 117.5 93 62.4
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.9e-24 116.7 93 59.1
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.9e-24 116.7 92 59.8
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.9e-24 116.7 96 53.1
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.5e-24 116.3 93 61.3
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 2.5e-24 116.3 91 60.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 3.3e-24 115.9 85 64.7
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.3e-24 115.9 92 60.9
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 3.3e-24 115.9 95 55.8
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 4.3e-24 115.5 93 58.1
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.3e-24 115.5 93 60.2
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 9.6e-24 114.4 85 63.5
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-23 114.0 84 64.3
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.3e-23 114.0 93 58.1
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.3e-23 114.0 93 58.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.3e-23 114.0 93 58.1
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-23 113.6 82 62.2
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 2.1e-23 113.2 91 53.8
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.1e-23 113.2 91 59.3
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.1e-23 113.2 85 61.2
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.1e-23 113.2 84 61.9
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 2.8e-23 112.8 120 50.8
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 2.8e-23 112.8 120 50.8
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.8e-23 112.8 90 60.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 3.7e-23 112.5 97 55.7
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.7e-23 112.5 99 55.6
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 4.8e-23 112.1 90 58.9
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 4.8e-23 112.1 122 50.0
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 6.2e-23 111.7 93 58.1
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 8.1e-23 111.3 93 57.0
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 8.1e-23 111.3 93 57.0
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 8.1e-23 111.3 93 59.1
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.1e-22 110.9 93 58.1
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.4e-22 110.5 93 57.0
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.4e-22 109.8 84 59.5
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 2.4e-22 109.8 93 55.9
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.4e-22 109.8 93 52.7
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 3.1e-22 109.4 93 58.1
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 4.0e-22 109.0 101 55.4
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.9e-22 108.2 96 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 9.0e-22 107.8 92 56.5
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 9.0e-22 107.8 84 58.3
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.5e-21 107.1 83 59.0
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.5e-21 107.1 96 53.1
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-21 107.1 90 54.4
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.6e-21 106.3 96 53.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.6e-21 106.3 82 59.8
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.6e-21 106.3 91 54.9
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.8e-21 105.1 93 55.9
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 5.8e-21 105.1 93 55.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 7.6e-21 104.8 93 53.8
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.3e-20 104.0 93 53.8
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.3e-20 104.0 93 52.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.9e-20 102.8 91 53.8
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 6.4e-20 101.7 91 51.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.9e-19 100.1 100 50.0
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.1e-19 98.2 93 52.7
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 7.1e-19 98.2 81 55.6
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.3e-19 97.8 93 51.6
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.2e-18 97.4 42 97.6
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 1.6e-18 97.1 92 51.1
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.7e-18 96.3 93 50.5
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.0e-18 95.1 88 52.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.0e-18 95.1 88 52.3
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 7.9e-18 94.7 85 52.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.3e-17 94.0 43 90.7
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.0e-17 92.8 85 50.6
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 8.7e-17 91.3 81 51.9
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 1.9e-16 90.1 95 46.3
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 2.5e-16 89.7 90 47.8
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 1.4e-14 84.0 92 45.7
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.1e-14 82.8 73 49.3
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.0e-14 81.3 81 44.4
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 7.6e-13 78.2 82 46.3
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.4e-11 73.9 34 82.4
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.9e-09 65.9 67 50.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 3.9e-09 65.9 67 50.7
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 3.9e-09 65.9 32 68.8
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-08 63.9 66 48.5
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 8.2e-07 58.2 42 66.7
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.4e-06 57.4 93 38.7
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.1e-06 56.2 27 85.2
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 5.3e-06 55.5 53 45.3


User provided reference genes

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