Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.8e-200 701.4 395 100.0
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.6e-185 651.4 390 88.5
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 6.6e-184 647.5 391 89.3
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.6e-148 529.3 327 80.1
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 7.6e-148 527.7 327 79.8
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.4e-146 523.5 324 79.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.9e-146 523.1 327 79.2
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.2e-146 522.3 327 78.6
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 5.5e-146 521.5 328 78.4
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-145 520.4 339 77.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 6.0e-145 518.1 329 78.4
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 7.9e-145 517.7 326 79.4
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 2.3e-144 516.2 329 78.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-144 515.4 338 76.6
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.9e-144 515.4 324 77.8
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 6.7e-144 514.6 322 78.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.5e-143 513.5 325 76.9
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 3.3e-143 512.3 328 75.6
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 5.6e-143 511.5 330 77.9
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 7.4e-143 511.1 336 75.6
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 7.4e-143 511.1 327 77.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.6e-142 510.0 396 66.4
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 3.7e-142 508.8 325 76.0
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 1.8e-141 506.5 335 76.4
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 2.4e-141 506.1 322 78.0
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.4e-141 506.1 331 75.2
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 2.4e-141 506.1 333 75.1
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 5.3e-141 505.0 331 75.8
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 6.9e-141 504.6 324 75.9
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.2e-140 503.8 337 75.1
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 1.2e-140 503.8 327 78.0
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.2e-140 503.8 335 75.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.0e-140 503.1 331 76.1
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.0e-139 500.7 331 74.6
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.7e-139 500.0 387 67.2
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 2.2e-139 499.6 326 75.8
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 6.5e-139 498.0 333 73.6
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.1e-138 497.3 343 73.2
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.1e-138 497.3 333 73.6
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.1e-138 497.3 333 73.6
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.5e-138 496.1 324 76.9
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 7.1e-138 494.6 329 74.5
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 7.1e-138 494.6 339 72.0
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.7e-137 492.7 331 73.7
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.5e-137 492.3 331 73.7
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.0e-136 490.7 334 72.8
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.8e-136 490.0 334 74.0
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.9e-136 488.8 331 73.1
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.9e-136 488.8 331 73.1
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 8.7e-136 487.6 338 74.0
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 8.7e-136 487.6 351 70.1
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.1e-135 487.3 332 72.6
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 8.2e-134 481.1 338 70.7
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 9.0e-133 477.6 324 72.2
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.5e-132 476.9 286 80.1
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.5e-132 476.9 323 71.5
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 3.4e-132 475.7 343 71.1
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 5.9e-132 474.9 455 58.0
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.0e-131 474.2 334 70.4
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.3e-131 473.8 332 72.6
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 8.5e-131 471.1 323 70.9
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 8.5e-131 471.1 323 70.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.1e-130 470.7 349 69.3
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.9e-130 469.9 330 69.1
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 3.2e-130 469.2 323 69.7
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 5.5e-130 468.4 323 70.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 5.5e-130 468.4 323 70.3
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 7.2e-130 468.0 322 71.4
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 9.4e-130 467.6 322 70.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.6e-129 466.8 323 69.7
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.1e-129 466.5 323 69.7
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 2.7e-129 466.1 342 67.8
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.3e-128 463.0 323 69.0
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 3.9e-128 462.2 357 66.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.1e-127 460.7 332 68.7
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.3e-127 458.8 323 70.6
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 5.7e-127 458.4 458 54.8
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 9.7e-127 457.6 329 69.6
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 2.2e-126 456.4 323 69.0
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 3.7e-126 455.7 324 68.8
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.8e-125 453.4 332 66.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.8e-125 453.4 332 66.6
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.0e-124 449.9 329 66.3
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.0e-124 449.9 319 69.9
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.6e-124 449.5 321 68.2
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 4.5e-124 448.7 324 67.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.3e-123 447.2 324 67.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.9e-123 446.0 324 67.3
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.9e-123 446.0 324 67.3
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 5.5e-122 441.8 324 66.0
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.6e-121 440.3 324 67.3
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 5.1e-120 435.3 336 67.0
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.1e-119 434.1 340 66.2
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 4.4e-119 432.2 337 65.0
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 5.3e-117 425.2 279 74.2
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 9.1e-117 424.5 327 64.8
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.0e-115 418.7 335 65.1
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.6e-113 413.7 373 60.3
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 3.9e-112 409.1 282 71.3
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.3e-110 404.1 331 63.1
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 2.8e-110 402.9 370 56.8
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.8e-110 402.9 300 65.3
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 6.3e-110 401.7 276 83.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.0e-109 398.3 302 66.2
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.2e-106 389.0 215 85.1
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.7e-105 386.3 282 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 3.0e-104 382.9 269 67.7
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 8.8e-104 381.3 238 76.9
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.5e-103 380.6 213 84.0
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.4e-101 374.0 263 71.5
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 7.0e-101 371.7 284 66.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 2.5e-98 363.2 258 66.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.3e-91 340.1 546 40.1
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.9e-91 339.7 258 68.2
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 5.5e-90 335.5 221 78.3
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 3.6e-89 332.8 230 73.9
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.8e-88 330.5 196 78.6
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-84 317.0 266 58.6
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.3e-83 313.5 215 70.7
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 3.8e-83 312.8 217 68.7
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 7.0e-77 292.0 240 60.8
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.0e-76 290.4 328 52.1
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 3.3e-66 256.5 186 72.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.7e-46 191.0 242 43.4
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.7e-43 178.7 265 37.0
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 3.4e-31 140.2 286 33.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.6e-25 121.3 176 40.3
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.8e-25 119.8 91 68.1
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.1e-24 118.6 109 61.5
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.2e-23 115.2 89 66.3
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.0e-23 114.4 119 52.9
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.8e-23 112.8 79 72.2
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 5.8e-23 112.8 109 58.7
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 7.6e-23 112.5 98 61.2
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-22 111.7 77 75.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-22 111.7 77 75.3
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-22 111.3 77 72.7
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-22 109.8 77 71.4
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 8.4e-22 109.0 130 48.5
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 3.2e-21 107.1 75 68.0
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.3e-21 105.5 77 68.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 6.5e-14 82.8 73 60.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 6.5e-14 82.8 166 30.7
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.5e-13 80.9 166 31.9
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.2e-12 78.6 156 37.2
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 2.1e-12 77.8 247 26.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 3.9e-11 73.6 171 32.7
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 3.9e-11 73.6 161 31.1
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.0e-06 58.9 68 47.1


User provided reference genes

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