Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 0.0e+00 1196.0 603 100.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 0.0e+00 1119.8 670 86.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 0.0e+00 1078.9 654 85.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 7.8e-261 903.7 590 80.2
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 7.3e-235 817.4 675 66.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 7.4e-227 790.8 679 64.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.6e-226 789.6 677 63.4
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.8e-225 786.2 657 65.1
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.0e-225 785.0 667 64.5
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 6.9e-225 784.3 678 64.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 6.9e-225 784.3 678 64.7
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.7e-223 779.6 671 65.4
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-223 779.2 677 63.4
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 8.4e-223 777.3 676 63.5
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.6e-221 773.1 675 63.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 6.0e-221 771.2 678 63.3
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-220 770.0 678 63.3
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.3e-220 770.0 677 62.8
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.0e-220 768.8 675 63.9
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.0e-220 768.8 704 60.9
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.9e-219 766.1 679 62.3
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.8e-216 754.6 677 62.3
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.3e-215 753.4 677 62.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.8e-215 751.9 670 63.1
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.8e-215 751.9 642 64.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 6.5e-215 751.1 683 62.1
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.9e-214 749.6 674 61.7
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.5e-214 749.2 734 58.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.1e-213 746.1 686 60.3
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.1e-211 740.3 617 66.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 2.2e-210 736.1 672 61.2
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.7e-210 735.3 678 60.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 6.3e-210 734.6 661 61.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.1e-209 731.9 702 60.7
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.3e-209 731.5 675 60.3
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 4.5e-208 728.4 680 60.9
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.8e-207 725.3 611 64.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 8.5e-207 724.2 634 62.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.5e-206 722.6 679 59.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.8e-202 709.1 677 58.8
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 5.3e-201 704.9 678 60.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.0e-200 703.0 613 64.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.0e-199 700.7 670 59.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.4e-198 694.1 674 59.6
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.2e-197 693.7 670 59.1
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.9e-197 691.0 674 58.5
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.0e-196 689.1 642 59.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 8.8e-196 687.6 675 59.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.1e-195 687.2 680 57.9
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.7e-195 684.9 796 51.5
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 7.4e-195 684.5 671 57.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.1e-193 680.6 688 58.3
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.1e-193 680.6 685 58.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.4e-193 680.2 671 58.1
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 7.0e-193 677.9 674 58.5
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-191 673.7 677 58.8
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.2e-191 672.9 661 57.8
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.9e-190 669.8 674 57.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.9e-190 669.8 620 59.7
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.4e-187 658.7 678 56.8
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.7e-186 656.8 677 56.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.6e-184 650.2 446 74.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.0e-184 649.8 641 57.6
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 5.0e-183 645.2 559 64.6
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.9e-182 643.3 686 55.1
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 4.2e-182 642.1 680 55.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 4.2e-182 642.1 611 60.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.2e-181 640.6 656 55.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 9.7e-179 630.9 740 51.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.1e-177 625.5 586 60.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 9.1e-177 624.4 650 56.8
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.3e-175 620.5 665 54.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.7e-173 612.1 650 54.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.0e-172 609.4 664 52.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-171 607.1 599 58.6
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.8e-171 604.4 537 62.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 6.3e-170 601.7 664 54.7
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 8.3e-170 601.3 670 51.9
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.4e-169 600.5 544 62.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 3.1e-169 599.4 649 55.9
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 9.1e-169 597.8 431 73.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.1e-166 590.9 663 52.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.2e-166 589.0 663 51.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.2e-165 587.4 698 51.7
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.0e-164 582.4 664 52.0
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.0e-163 580.1 664 51.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.0e-163 580.1 664 51.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.0e-163 580.1 664 51.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.4e-163 579.3 668 50.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 3.4e-163 579.3 664 51.1
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 3.4e-163 579.3 664 51.1
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.9e-159 565.8 668 50.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.9e-159 565.8 668 50.6
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-157 560.8 696 51.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 5.2e-156 555.4 671 49.5
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-153 547.0 705 49.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.6e-151 538.1 627 51.5
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.4e-146 521.9 549 53.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.1e-144 516.9 445 62.2
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 8.6e-143 511.5 452 63.3
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.3e-142 509.6 676 47.6
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 7.3e-142 508.4 658 48.6
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.4e-137 493.4 612 51.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.7e-136 490.0 671 45.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 6.2e-133 478.8 607 47.8
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.9e-127 459.5 669 46.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-123 448.0 402 63.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.7e-119 434.1 668 42.5
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.8e-108 397.5 452 52.7
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 4.0e-108 396.4 446 51.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.7e-106 391.0 610 43.1
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 4.3e-94 349.7 582 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 3.7e-93 346.7 478 46.9
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.4e-92 344.7 593 40.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.7e-78 295.4 426 45.1
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 3.7e-77 293.5 480 43.1
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.5e-67 260.0 200 66.0
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 4.7e-64 250.0 314 51.9
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-62 244.6 335 43.0
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 4.2e-57 226.9 286 53.1
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-54 218.8 282 44.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-54 218.4 322 42.2
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 4.3e-49 200.3 166 61.4
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 5.2e-47 193.4 235 45.1
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.9e-47 192.6 114 90.4
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.9e-41 174.9 304 44.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 8.9e-39 166.0 254 46.5
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.5e-38 165.2 91 98.9
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 8.3e-37 159.5 96 90.6
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 3.5e-35 154.1 83 85.5
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.6e-34 149.8 260 45.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.2e-32 145.6 247 37.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 6.8e-31 139.8 179 53.6
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.3e-25 120.6 126 50.8
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.2e-21 108.2 192 43.8
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 5.4e-20 103.6 58 82.8
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 6.6e-18 96.7 73 67.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.8e-16 91.3 261 29.9
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-15 89.4 63 63.5
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.4e-15 89.0 51 86.3
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.4e-15 88.2 177 33.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 8.9e-15 86.3 114 40.4
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 8.9e-15 86.3 114 40.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-14 85.5 139 43.9
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 7.6e-14 83.2 64 75.0
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.7e-13 82.0 118 45.8
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 9.3e-12 76.3 53 64.2
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.6e-11 75.5 147 32.7
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.5e-11 74.3 72 54.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.5e-11 74.3 72 54.2
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.7e-10 72.0 97 52.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 8.7e-10 69.7 136 33.1
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 3.1e-07 61.2 107 35.5
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 5.3e-07 60.5 32 93.8
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 2.0e-06 58.5 58 53.4


User provided reference genes

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