Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 0.0e+00 1383.2 687 100.0
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1275.8 714 90.3
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1266.5 712 89.2
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1262.7 714 88.8
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1153.3 694 82.7
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1147.9 712 81.5
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1147.9 727 79.4
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1145.2 706 81.3
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1142.5 712 80.6
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1138.3 714 79.1
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1135.6 712 80.2
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1135.6 712 80.3
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1133.2 713 80.4
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1132.9 717 79.5
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1123.6 713 78.7
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1117.1 713 77.8
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1114.4 748 76.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1114.0 703 78.9
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1113.6 714 78.7
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1112.4 712 77.5
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1110.1 719 77.7
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1110.1 719 77.7
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1108.2 715 76.2
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1106.7 715 76.8
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1105.1 710 77.7
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1104.4 710 77.7
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1103.6 704 78.1
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1102.8 678 81.0
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1102.4 715 76.6
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1100.9 717 76.6
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1099.7 703 78.2
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1099.7 711 77.9
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1099.3 681 79.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1099.0 714 77.2
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1098.6 715 76.1
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1097.0 715 76.1
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1094.3 713 76.4
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1092.8 713 75.9
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1092.4 697 77.2
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1092.0 714 76.6
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1091.3 747 73.6
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1090.1 717 75.6
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1088.6 713 77.3
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1088.6 715 74.5
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1088.6 695 77.0
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1088.2 730 74.4
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1088.2 810 69.1
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1086.2 740 74.3
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1085.5 714 75.4
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1080.1 706 76.2
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1079.3 710 75.6
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1078.5 707 76.1
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1078.5 713 76.0
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1077.4 710 75.6
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1077.0 699 76.8
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1075.5 710 75.4
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1075.1 712 75.8
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 4.7e-312 1074.7 714 75.1
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 3.3e-311 1071.2 716 75.4
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 5.6e-311 1070.5 716 75.3
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 7.0e-311 1070.1 725 74.5
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 2.1e-310 1068.5 719 73.7
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 5.1e-309 1063.9 716 74.0
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 5.1e-309 1063.9 712 74.0
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 6.7e-309 1063.5 709 74.2
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 3.3e-308 1061.2 721 73.8
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 5.7e-308 1060.4 713 73.4
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 7.4e-308 1060.1 729 72.4
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 7.4e-308 1060.1 729 72.7
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 9.7e-308 1059.7 713 74.9
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 1.3e-307 1059.3 713 73.9
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 2.8e-307 1058.1 691 76.7
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 1.1e-306 1056.2 710 73.7
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 2.4e-306 1055.0 741 71.5
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 2.4e-306 1055.0 735 73.5
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 2.6e-305 1051.6 722 72.4
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 5.9e-305 1050.4 693 77.2
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 1.7e-304 1048.9 695 74.1
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 8.5e-304 1046.6 691 74.7
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 2.5e-303 1045.0 707 74.1
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 7.2e-303 1043.5 707 73.3
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 3.6e-302 1041.2 715 73.3
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 2.3e-301 1038.5 713 73.5
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 2.2e-299 1031.9 806 66.5
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 3.7e-299 1031.2 715 72.9
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 4.2e-295 1017.7 794 66.8
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 2.1e-294 1015.4 707 71.9
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 1.6e-289 999.2 705 69.8
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 5.0e-288 994.2 703 72.1
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 8.0e-286 986.9 712 70.9
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 1.2e-284 983.0 706 69.4
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 8.5e-280 966.8 603 81.1
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 5.5e-279 964.1 687 70.7
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 3.6e-278 961.4 617 78.0
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 2.0e-265 919.1 582 76.6
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 1.2e-262 909.8 660 68.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 9.5e-255 883.6 710 64.8
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 4.4e-252 874.8 726 62.1
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 4.9e-251 871.3 721 61.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 6.4e-251 870.9 726 61.3
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.7e-248 862.8 642 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 3.3e-247 858.6 711 62.2
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 4.7e-246 854.7 541 77.6
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 3.1e-229 798.9 505 80.2
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 2.9e-227 792.3 697 56.8
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 9.6e-215 750.7 560 68.2
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.6e-214 750.0 689 59.7
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.3e-211 740.3 701 56.9
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 3.2e-186 656.0 703 52.8
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 2.5e-162 576.6 695 46.6
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.6e-159 566.6 391 73.7
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 6.4e-150 535.4 729 42.4
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 6.2e-145 518.8 325 77.8
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 8.3e-142 508.4 690 41.3
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 3.2e-133 479.9 288 80.6
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 4.1e-133 479.6 390 63.6
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.7e-129 466.1 288 78.1
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.1e-122 444.9 252 83.7
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 9.0e-112 408.7 253 75.9
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 9.0e-112 408.7 246 79.3
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.7e-110 404.4 301 69.1
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.7e-110 404.4 247 81.0
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 2.1e-105 387.5 244 75.4
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 5.3e-104 382.9 321 63.2
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.7e-94 351.3 259 67.2
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 5.5e-85 319.7 605 34.2
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 5.7e-58 229.9 216 57.4
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 2.4e-40 171.4 109 76.1
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 3.1e-40 171.0 85 89.4
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 2.0e-39 168.3 111 72.1
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 4.5e-39 167.2 86 87.2
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 5.0e-38 163.7 104 74.0
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-37 161.8 110 70.0
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 7.3e-37 159.8 110 70.0
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.0e-35 156.0 122 65.6
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 2.7e-31 141.4 99 68.7
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.5e-29 135.6 105 65.7
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 1.4e-27 129.0 92 69.6
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 4.9e-25 120.6 60 88.3
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 3.0e-22 111.3 52 90.4
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 1.8e-19 102.1 79 64.6
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 9.8e-18 96.3 66 66.7
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 2.2e-17 95.1 71 63.4
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 2.2e-17 95.1 70 67.1
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 6.4e-17 93.6 57 75.4
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 2.4e-16 91.7 48 83.3
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 4.0e-11 74.3 52 65.4
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 1.2e-10 72.8 36 83.3
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.9e-08 65.5 51 62.7
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 5.4e-08 63.9 31 83.9
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 5.4e-08 63.9 31 83.9
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 5.1e-06 57.4 192 26.0
Medtr1g089820 Medicago truncatula HOM05D000488 ORTHO05D000347 8.6e-06 56.6 196 26.0


User provided reference genes

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