Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 0.0e+00 2023.1 1031 100.0
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1693.7 940 91.9
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1690.2 917 93.8
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1625.1 913 90.0
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1348.2 920 73.4
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1327.4 922 72.5
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1327.4 924 72.6
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1300.8 908 71.5
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1296.2 918 70.9
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1284.6 917 70.2
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1272.7 923 69.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1270.4 920 69.2
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1270.0 913 70.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1265.0 920 69.6
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1263.4 925 67.6
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1262.7 924 69.2
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1261.5 909 70.3
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1259.6 919 70.0
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1259.2 918 69.5
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1258.8 924 68.5
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1258.0 918 69.4
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1254.2 914 69.3
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1253.8 920 69.2
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1251.1 926 68.1
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1246.9 914 68.8
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1246.1 921 68.9
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1245.3 927 68.0
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1243.4 920 68.7
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1243.0 922 67.4
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1241.9 921 68.7
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1234.9 944 67.1
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1232.2 927 67.5
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1223.4 948 66.0
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1217.6 1022 62.6
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1215.7 914 67.6
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1207.6 921 66.0
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1199.5 927 65.7
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1199.5 956 64.1
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1195.6 918 66.2
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1194.1 914 67.1
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1189.9 918 65.4
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1186.8 917 65.1
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1182.2 895 66.1
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1181.0 927 64.4
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1177.5 886 66.9
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1174.5 934 64.0
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1174.5 929 64.2
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1173.7 922 64.8
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1165.6 929 63.8
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1164.4 938 62.2
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1162.5 934 63.4
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1158.7 921 64.4
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1158.7 915 63.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1158.7 902 64.5
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1158.3 1020 60.1
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1157.9 951 61.2
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1157.1 921 64.2
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1156.0 915 64.0
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1153.7 889 65.1
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1153.3 930 63.9
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1150.6 921 62.8
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1148.3 938 63.1
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1147.9 938 63.1
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1139.4 948 62.2
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1136.3 1005 60.0
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1136.3 954 62.1
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1134.8 1026 58.7
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1127.1 889 65.1
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1126.7 890 65.4
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1117.1 938 62.3
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1115.1 915 62.6
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1113.2 919 62.7
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1113.2 914 62.8
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1112.8 918 62.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1107.0 921 62.3
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1105.1 915 62.5
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1102.4 921 61.7
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1101.7 917 62.3
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1099.0 915 62.2
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1099.0 923 61.9
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1095.1 923 60.2
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1092.4 921 61.6
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1087.8 867 63.8
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1087.4 915 61.7
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1085.5 918 61.9
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1076.6 923 60.5
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 4.5e-309 1064.7 815 65.9
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 1.5e-307 1059.7 973 56.5
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 1.6e-306 1056.2 969 57.7
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.4e-305 1053.1 951 57.3
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 4.8e-303 1044.6 916 60.4
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 2.0e-301 1039.3 919 58.0
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 4.0e-297 1025.0 909 58.7
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 9.8e-296 1020.4 924 57.8
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 5.0e-284 981.5 932 56.4
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 3.1e-281 972.2 937 54.9
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.2e-272 943.7 731 65.3
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 2.9e-271 939.1 954 53.2
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 1.4e-262 910.2 631 72.3
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 3.0e-236 822.8 629 66.5
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 6.9e-233 811.6 598 68.7
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 6.9e-225 785.0 942 46.5
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 1.0e-223 781.2 579 69.1
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 2.7e-221 773.1 545 69.2
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.1e-217 761.1 917 47.7
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 3.6e-213 746.1 789 50.2
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 2.0e-208 730.3 930 45.3
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.0e-196 691.4 535 64.5
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 5.5e-174 615.9 405 76.3
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 1.0e-167 595.1 835 41.4
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.4e-164 584.7 879 39.1
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 3.2e-145 520.4 447 61.3
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 3.1e-124 450.7 313 72.2
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 6.9e-124 449.5 336 66.7
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 9.9e-123 445.7 470 52.8
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-115 421.4 344 60.8
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 8.4e-114 416.0 460 49.8
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 4.2e-113 413.7 406 53.7
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 3.7e-109 400.6 328 61.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.5e-102 378.6 329 59.3
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.1e-84 316.2 218 71.6
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 1.2e-80 305.8 873 28.6
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.5e-73 281.6 274 54.0
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 2.6e-62 245.0 870 25.7
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 8.0e-56 223.4 576 28.0
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 3.5e-51 208.0 199 52.8
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 1.5e-49 202.6 118 84.7
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 2.0e-43 182.2 152 65.1
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 2.0e-43 182.2 152 65.1
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-41 175.3 136 62.5
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 6.0e-35 154.1 134 56.7
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 2.8e-32 145.2 113 58.4
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 4.7e-32 144.4 166 48.2
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 3.1e-31 141.7 145 49.0
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.9e-25 122.5 87 67.8
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.3e-25 120.6 87 66.7
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.3e-25 120.6 87 67.8
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 9.6e-25 120.2 87 66.7
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 9.6e-25 120.2 90 65.6
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.6e-24 119.4 87 66.7
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.7e-24 117.9 87 66.7
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.7e-24 117.9 87 66.7
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 8.1e-24 117.1 113 52.2
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.4e-23 116.3 87 65.5
DCAR_010218 Daucus carota HOM05D003697 ORTHO05D043544 3.2e-20 105.1 197 34.5
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 3.5e-19 101.7 492 23.0
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 1.3e-16 93.2 153 38.6
VMungo0251G1240 Vigna mungo HOM05D000087 ORTHO05D012327 1.8e-15 89.4 59 67.8
Lalb_Chr20g0123541 Lupinus albus HOM05D003697 ORTHO05D005452 7.1e-12 77.4 60 58.3
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 1.0e-10 73.6 59 62.7
SEGI_14626 Sequoiadendron giganteum HOM05D003697 ORTHO05D012276 7.4e-09 67.4 42 73.8
SEGI_31193 Sequoiadendron giganteum HOM05D000279 ORTHO05D012276 7.4e-09 67.4 42 73.8
Lalb_Chr23g0273611 Lupinus albus HOM05D003697 ORTHO05D005452 8.1e-08 63.9 47 68.1
MELO3C033947.2 Cucumis melo HOM05D023336 ORTHO05D166106 5.8e-06 57.8 68 52.9


User provided reference genes

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