Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 2.7e-255 884.8 440 100.0
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 2.2e-241 838.6 436 95.4
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 6.5e-241 837.0 436 95.0
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 5.0e-225 784.3 467 84.8
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.1e-179 633.6 435 73.8
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 4.2e-179 631.7 434 73.3
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 3.9e-177 625.2 434 73.0
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 1.5e-176 623.2 434 73.0
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 4.8e-175 618.2 434 71.4
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 4.8e-175 618.2 434 71.4
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 9.0e-174 614.0 435 70.3
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 2.6e-173 612.5 431 71.2
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 3.4e-173 612.1 434 72.1
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 3.4e-173 612.1 431 72.6
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.7e-172 609.8 440 70.0
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 2.9e-172 609.0 416 74.0
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.9e-172 609.0 431 70.8
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.9e-172 609.0 435 70.3
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 4.9e-172 608.2 435 70.1
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 6.4e-172 607.8 416 73.8
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.4e-172 607.8 435 70.1
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 8.4e-172 607.4 439 71.1
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 1.4e-171 606.7 441 70.7
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.4e-171 606.7 440 69.8
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 2.5e-171 605.9 434 70.5
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 5.5e-171 604.7 436 70.6
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 9.3e-171 604.0 420 73.3
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 1.2e-170 603.6 432 71.1
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 2.1e-170 602.8 432 71.5
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 2.7e-170 602.4 418 72.5
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 2.7e-170 602.4 436 70.2
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 7.9e-170 600.9 433 70.7
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 1.8e-169 599.7 391 76.0
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 1.8e-169 599.7 425 72.0
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 6.7e-169 597.8 419 72.1
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.1e-168 597.0 443 69.1
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 1.9e-168 596.3 419 71.4
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 5.6e-168 594.7 443 68.8
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 9.6e-168 594.0 418 72.0
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 1.3e-167 593.6 456 68.0
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 1.3e-167 593.6 432 69.0
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 1.3e-167 593.6 418 71.5
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 8.2e-167 590.9 416 71.6
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.1e-166 590.5 443 68.6
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 2.4e-166 589.3 422 71.3
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 4.5e-165 585.1 448 68.1
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 1.0e-164 583.9 418 69.9
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 2.2e-164 582.8 420 70.2
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 3.8e-164 582.0 420 70.5
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 2.7e-162 575.9 378 75.7
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.6e-162 575.1 434 70.5
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 2.3e-161 572.8 417 69.5
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 3.0e-161 572.4 439 67.4
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 1.6e-159 566.6 420 67.4
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 4.8e-159 565.1 420 67.1
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 1.1e-158 563.9 389 72.8
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 1.1e-158 563.9 390 73.1
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 1.1e-158 563.9 400 71.2
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 1.4e-158 563.5 390 72.8
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 1.8e-158 563.1 422 68.7
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 4.1e-158 562.0 406 70.4
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 5.3e-158 561.6 390 73.3
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 9.0e-158 560.8 355 77.5
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.2e-157 560.5 387 71.8
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 2.0e-157 559.7 400 71.2
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 2.6e-157 559.3 376 73.7
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 5.9e-157 558.1 396 70.7
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 5.9e-157 558.1 432 64.8
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 7.7e-157 557.8 401 70.3
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 7.7e-157 557.8 390 73.1
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 7.7e-157 557.8 432 65.3
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 1.0e-156 557.4 345 80.3
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 2.2e-156 556.2 434 66.8
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 3.8e-156 555.4 365 74.5
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 3.8e-156 555.4 432 65.3
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 2.5e-155 552.7 405 70.9
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 3.2e-155 552.4 418 67.7
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 5.5e-155 551.6 432 64.8
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 7.2e-155 551.2 416 70.0
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 7.9e-154 547.7 398 68.3
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 1.8e-153 546.6 441 63.7
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 3.0e-153 545.8 437 64.8
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 2.5e-152 542.7 445 63.6
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 4.3e-152 542.0 459 62.1
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 3.2e-147 525.8 350 74.0
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 5.5e-147 525.0 354 75.1
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 6.7e-145 518.1 343 75.5
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 1.5e-144 516.9 382 66.2
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 2.0e-144 516.5 404 65.1
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 8.2e-143 511.1 430 63.3
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 1.8e-142 510.0 357 69.2
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 3.5e-141 505.8 428 61.4
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 5.7e-136 488.4 391 67.3
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 1.7e-135 486.9 375 65.3
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 3.7e-135 485.7 355 67.0
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 8.2e-135 484.6 359 67.1
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 1.1e-134 484.2 436 60.6
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 1.5e-120 437.2 431 56.8
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 1.0e-116 424.5 427 56.4
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 6.6e-116 421.8 392 54.8
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 2.3e-108 396.7 390 54.4
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 1.2e-98 364.4 434 50.7
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 5.2e-97 359.0 363 52.6
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 1.3e-95 354.4 302 66.6
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 8.7e-76 288.5 453 37.7
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.6e-53 214.5 159 69.8
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.0e-52 211.8 129 73.6
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.3e-44 184.1 134 70.1
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 1.2e-40 171.8 122 73.8
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.2e-37 161.8 88 87.5
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.7e-37 160.6 144 59.7
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 6.5e-31 139.4 161 54.0
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.0e-28 132.1 82 75.6
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 1.6e-21 108.2 61 83.6
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 6.5e-15 86.3 43 83.7
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 1.0e-12 79.0 96 44.8
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 4.1e-09 67.0 56 55.4
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 7.0e-09 66.2 40 70.0
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 2.7e-08 64.3 291 24.4
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 7.7e-08 62.8 292 22.9
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 1.0e-07 62.4 291 22.0
Sabra10G0098600 Salix brachista HOM05D002406 ORTHO05D007964 1.0e-07 62.4 291 24.1
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 1.3e-07 62.0 290 23.4
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 2.2e-07 61.2 291 22.3
Sabra08G0088500 Salix brachista HOM05D002406 ORTHO05D007964 2.2e-07 61.2 299 22.4
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 5.0e-07 60.1 291 22.3
Nn3g17743 Nelumbo nucifera HOM05D002406 ORTHO05D007964 5.0e-07 60.1 207 25.6
SGA_v2.0_scaffold62G21327 Striga asiatica HOM05D000084 ORTHO05D015106 5.0e-07 60.1 174 27.0
SGA_v2.0_scaffold62G21329_2 Striga asiatica HOM05D000084 ORTHO05D015106 6.5e-07 59.7 174 27.0
MSTRG.14031 Avicennia marina HOM05D000084 ORTHO05D000639 1.1e-06 58.9 192 28.6
Lj6A727T95 Lonicera japonica HOM05D000084 ORTHO05D000639 1.1e-06 58.9 194 26.3
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 1.1e-06 58.9 291 22.7
Actinidia03834 Actinidia chinensis HOM05D000084 ORTHO05D000639 1.5e-06 58.5 200 27.5
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 1.5e-06 58.5 292 21.6
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 1.5e-06 58.5 256 23.4
AL2G27800 Arabidopsis lyrata HOM05D002406 ORTHO05D007964 1.9e-06 58.2 293 22.9
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.9e-06 58.2 330 24.2
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 1.9e-06 58.2 291 22.3
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 2.5e-06 57.8 292 21.9
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 2.5e-06 57.8 292 21.2
Ah.03g137950 Amaranthus hybridus HOM05D002406 ORTHO05D007964 3.2e-06 57.4 207 23.7
BcaB03g15855 Brassica carinata HOM05D002406 ORTHO05D007964 3.2e-06 57.4 292 22.9
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 3.2e-06 57.4 292 22.9
Nitab4.5_0000597g0020 Nicotiana tabacum HOM05D002406 ORTHO05D007964 3.2e-06 57.4 292 22.3
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 3.2e-06 57.4 291 22.7
TAR629G2259 Trochodendron aralioides HOM05D002406 ORTHO05D007964 3.2e-06 57.4 291 23.4
Manes.14G097700 Manihot esculenta HOM05D002406 ORTHO05D007964 4.2e-06 57.0 291 23.0
CAN.G20.19 Capsicum annuum HOM05D000084 ORTHO05D000639 5.5e-06 56.6 193 28.0
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 5.5e-06 56.6 292 21.9
PSO063G1488 Papaver somniferum HOM05D002406 ORTHO05D007964 5.5e-06 56.6 291 23.0
PSO782G1356 Papaver somniferum HOM05D002406 ORTHO05D007964 5.5e-06 56.6 291 23.0
TWI31G1069 Tripterygium wilfordii HOM05D002406 ORTHO05D007964 5.5e-06 56.6 205 23.9
CBR_g8256 Chara braunii HOM05D002406 ORTHO05D007964 7.2e-06 56.2 208 25.0
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 7.2e-06 56.2 292 22.6
Gohir.A06G107900 Gossypium hirsutum HOM05D000084 ORTHO05D000639 7.2e-06 56.2 194 27.8
Gorai.010G124800 Gossypium raimondii HOM05D000084 ORTHO05D000639 7.2e-06 56.2 194 27.8
RcHm_v2.0_Chr4g0435821 Rosa chinensis HOM05D002406 ORTHO05D007964 7.2e-06 56.2 292 22.9
Sopen08g020130 Solanum pennellii HOM05D000084 ORTHO05D000639 7.2e-06 56.2 192 28.6
Sp5g23940 Schrenkiella parvula HOM05D002406 ORTHO05D007964 9.4e-06 55.8 292 22.6
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 9.4e-06 55.8 292 21.6


User provided reference genes

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