Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 9.6e-150 533.5 274 100.0
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 1.2e-128 463.4 280 86.4
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 1.0e-127 460.3 279 86.4
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 8.0e-112 407.5 275 79.3
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.2e-102 377.1 274 73.4
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 2.3e-90 336.3 288 64.6
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 2.9e-90 335.9 289 64.7
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 3.3e-89 332.4 281 64.8
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.8e-87 326.6 285 63.9
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 4.0e-87 325.5 286 62.9
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 3.7e-85 318.9 274 62.0
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 3.7e-85 318.9 274 62.4
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 3.7e-85 318.9 275 63.3
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 7.0e-84 314.7 277 63.9
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 5.9e-83 311.6 283 62.2
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.0e-82 310.8 292 60.3
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.3e-82 310.5 279 62.0
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 5.0e-82 308.5 276 60.5
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 5.0e-82 308.5 276 60.5
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 8.6e-82 307.8 270 61.9
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 1.1e-81 307.4 286 59.8
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 1.5e-81 307.0 276 60.1
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.3e-81 305.8 287 58.5
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 9.5e-81 304.3 276 62.0
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.1e-80 303.1 277 60.6
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 8.0e-80 301.2 292 58.6
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.4e-79 300.4 279 59.9
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.8e-79 300.1 295 59.7
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.1e-79 299.3 291 58.1
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.1e-79 299.3 291 58.1
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.0e-79 298.9 297 59.3
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.0e-79 298.9 277 59.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 5.2e-79 298.5 295 58.3
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 8.9e-79 297.7 275 58.9
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 2.0e-78 296.6 275 60.4
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 2.6e-78 296.2 295 58.6
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.4e-78 295.4 307 57.3
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.3e-77 293.9 278 58.6
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.3e-77 293.9 279 58.4
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.3e-77 293.9 287 58.2
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.9e-77 292.7 288 58.7
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 3.7e-77 292.4 278 59.7
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 2.4e-76 289.7 279 57.7
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 4.6e-75 285.4 284 58.5
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 6.0e-75 285.0 284 58.5
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.8e-75 284.6 322 54.0
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 7.8e-75 284.6 287 56.1
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.0e-74 284.3 285 56.8
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 1.7e-74 283.5 280 57.9
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 3.0e-74 282.7 274 55.8
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 5.0e-74 282.0 285 56.5
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 6.6e-74 281.6 282 58.5
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 8.6e-74 281.2 352 47.2
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 4.3e-73 278.9 277 58.1
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 5.6e-73 278.5 287 55.7
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 9.5e-73 277.7 276 58.3
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 4.0e-71 272.3 276 56.5
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 5.2e-71 271.9 310 54.2
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 5.2e-71 271.9 279 54.8
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 5.2e-71 271.9 281 55.2
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 8.9e-71 271.2 284 56.0
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 1.2e-70 270.8 281 54.4
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.5e-70 270.4 299 55.9
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 1.5e-70 270.4 275 55.3
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 3.4e-70 269.2 269 57.2
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 4.4e-70 268.9 273 54.6
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 9.9e-70 267.7 288 54.2
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 2.9e-69 266.2 272 54.8
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 4.9e-69 265.4 283 56.5
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 6.4e-69 265.0 274 52.9
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 8.3e-69 264.6 286 53.1
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.1e-68 264.2 292 53.4
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 2.4e-68 263.1 285 54.7
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 3.2e-68 262.7 275 53.5
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 5.4e-68 261.9 293 52.6
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 7.1e-68 261.5 326 48.5
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 7.1e-68 261.5 360 45.3
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 9.2e-68 261.2 272 53.7
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.6e-67 260.4 272 52.9
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 3.5e-67 259.2 233 61.4
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 1.3e-66 257.3 293 54.9
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.3e-66 256.5 287 53.0
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 3.9e-66 255.8 285 53.7
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 5.1e-66 255.4 279 52.7
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 4.3e-65 252.3 284 54.6
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 7.3e-65 251.5 284 52.8
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 7.3e-65 251.5 290 52.1
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 4.7e-64 248.8 290 51.0
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 8.1e-64 248.1 272 53.7
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 8.1e-64 248.1 273 52.7
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.8e-63 246.9 280 52.1
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.6e-62 243.0 278 52.5
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 3.4e-62 242.7 295 48.1
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 8.4e-61 238.0 255 52.9
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.2e-60 236.1 255 52.9
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 4.1e-60 235.7 290 49.3
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 3.5e-59 232.6 273 50.2
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 3.5e-59 232.6 273 50.2
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 3.5e-59 232.6 273 50.2
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 1.0e-58 231.1 276 49.3
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 1.0e-58 231.1 273 50.2
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.0e-58 231.1 273 50.2
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.3e-58 230.7 282 48.2
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 3.9e-58 229.2 274 50.4
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 5.1e-58 228.8 272 48.9
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.9e-57 226.9 274 51.1
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.3e-57 226.1 279 48.7
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 5.6e-57 225.3 230 53.5
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 9.6e-57 224.6 276 50.4
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.1e-55 221.1 272 49.3
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.0e-55 219.2 280 47.9
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 9.0e-55 218.0 272 48.9
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.0e-54 216.9 282 47.5
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 7.6e-54 214.9 271 47.6
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 2.3e-50 203.4 191 60.7
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 6.6e-50 201.8 269 50.2
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 9.6e-49 198.0 479 33.8
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 2.0e-46 190.3 296 44.3
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.5e-46 189.1 173 59.0
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.8e-45 186.0 510 31.8
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.0e-42 177.9 294 40.8
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.0e-42 177.9 286 43.7
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.9e-42 176.0 283 43.8
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 5.8e-38 162.2 283 39.9
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.3e-37 161.0 176 55.1
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 1.7e-37 160.6 273 41.8
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 4.9e-37 159.1 226 45.1
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 1.6e-35 154.1 119 67.2
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 2.7e-35 153.3 175 50.3
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 6.0e-35 152.1 176 50.0
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 6.0e-35 152.1 275 39.3
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 6.2e-32 142.1 175 45.7
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.4e-31 141.0 234 41.0
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 1.0e-29 134.8 275 34.5
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 3.5e-27 126.3 210 41.4
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 1.3e-26 124.4 109 65.1
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.3e-24 117.9 147 44.9
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 3.7e-24 116.3 175 44.6
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 4.1e-23 112.8 114 53.5
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 6.9e-23 112.1 273 34.1
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 6.5e-21 105.5 264 35.2
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 2.7e-19 100.1 105 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.7e-16 90.9 157 36.9
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.8e-15 87.4 226 31.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.1e-15 85.1 152 37.5
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 7.7e-14 82.0 166 35.5
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-13 81.3 149 37.6
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-12 78.2 153 35.3
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 3.2e-12 76.6 186 30.1
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.9e-11 72.0 147 34.0
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.8e-10 70.9 152 32.9
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.0e-10 70.1 147 34.7
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.1e-10 69.3 167 32.9
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.7e-10 68.9 152 36.2
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.0e-09 67.4 144 31.9
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.3e-08 64.7 169 33.1
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.3e-08 64.7 147 35.4
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.7e-08 63.2 154 29.2
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.7e-08 63.2 71 45.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.8e-08 62.8 155 32.9
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.3e-08 62.4 161 30.4
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 6.3e-08 62.4 263 26.6
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 6.3e-08 62.4 75 49.3
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 6.3e-08 62.4 75 49.3
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 8.2e-08 62.0 155 31.6
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 8.2e-08 62.0 148 29.1
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 8.2e-08 62.0 270 24.4
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.1e-07 61.6 265 26.4
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 4.1e-07 59.7 184 29.3
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 5.3e-07 59.3 70 44.3
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.3e-07 59.3 80 45.0
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 6.9e-07 58.9 80 40.0
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 6.9e-07 58.9 80 43.8
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.9e-07 58.9 196 29.6
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 9.1e-07 58.5 214 29.9
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 2.0e-06 57.4 147 29.9
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 2.6e-06 57.0 71 43.7
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 4.5e-06 56.2 77 41.6
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 4.5e-06 56.2 90 40.0
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 5.9e-06 55.8 79 41.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.9e-06 55.8 147 29.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 7.7e-06 55.5 144 32.6


User provided reference genes

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