Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 1.9e-92 342.4 165 100.0
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 4.0e-82 308.1 165 90.3
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 2.1e-75 285.8 166 85.5
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 3.3e-60 235.3 165 72.1
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 5.8e-57 224.6 161 72.7
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 1.3e-56 223.4 160 71.2
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 4.9e-56 221.5 133 78.9
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 6.4e-56 221.1 123 84.6
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 1.1e-55 220.3 123 83.7
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 1.4e-55 219.9 161 68.9
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.9e-55 219.5 123 83.7
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.9e-55 219.5 123 83.7
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 1.9e-55 219.5 153 73.9
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 4.1e-55 218.4 122 82.8
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 7.0e-55 217.6 151 70.2
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 1.2e-54 216.9 122 82.8
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 2.0e-54 216.1 128 80.5
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 2.7e-54 215.7 147 69.4
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.3e-53 213.4 154 68.8
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.3e-53 213.4 152 71.7
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.3e-53 213.4 152 71.7
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 1.7e-53 213.0 123 82.9
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 1.7e-53 213.0 132 78.0
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 1.7e-53 213.0 124 80.6
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.3e-53 212.6 123 83.7
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 3.0e-53 212.2 149 71.1
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 3.0e-53 212.2 122 82.8
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 3.0e-53 212.2 140 72.1
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 3.0e-53 212.2 153 69.3
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 3.9e-53 211.8 148 70.3
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 3.9e-53 211.8 136 75.7
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 5.0e-53 211.5 147 68.7
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 6.6e-53 211.1 147 68.7
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 6.6e-53 211.1 147 68.7
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 8.6e-53 210.7 169 64.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 1.5e-52 209.9 118 82.2
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 1.5e-52 209.9 123 80.5
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 2.5e-52 209.1 161 66.5
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 3.3e-52 208.8 118 80.5
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 5.6e-52 208.0 122 77.9
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 5.6e-52 208.0 118 80.5
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 5.6e-52 208.0 129 78.3
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 9.5e-52 207.2 136 70.6
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 1.6e-51 206.5 149 67.8
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 2.1e-51 206.1 138 75.4
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 2.1e-51 206.1 138 75.4
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 3.6e-51 205.3 113 84.1
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 3.6e-51 205.3 119 84.0
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 6.2e-51 204.5 147 69.4
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.4e-50 203.4 112 84.8
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 3.1e-50 202.2 154 67.5
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 3.1e-50 202.2 155 67.1
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.1e-50 202.2 148 68.9
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 4.0e-50 201.8 162 66.7
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 4.0e-50 201.8 141 68.8
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 6.8e-50 201.1 186 57.5
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 8.9e-50 200.7 150 68.7
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 8.9e-50 200.7 158 65.2
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 1.2e-49 200.3 153 66.0
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 2.0e-49 199.5 131 72.5
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 2.0e-49 199.5 147 64.6
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 2.6e-49 199.1 153 64.1
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 4.4e-49 198.4 159 64.8
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 1.3e-48 196.8 122 77.0
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 1.3e-48 196.8 137 69.3
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 1.7e-48 196.4 112 79.5
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 1.7e-48 196.4 176 58.0
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 2.2e-48 196.1 110 80.9
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 2.2e-48 196.1 171 60.8
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 2.9e-48 195.7 136 67.6
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.9e-48 195.7 158 63.3
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 2.9e-48 195.7 158 63.3
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 3.7e-48 195.3 100 87.0
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 4.9e-48 194.9 158 63.9
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 4.9e-48 194.9 114 80.7
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 4.9e-48 194.9 114 80.7
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 6.4e-48 194.5 122 77.9
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 8.3e-48 194.1 154 64.3
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.1e-47 193.7 164 62.2
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 1.1e-47 193.7 131 67.9
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 1.4e-47 193.4 100 86.0
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 1.9e-47 193.0 151 65.6
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 1.9e-47 193.0 148 63.5
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 2.4e-47 192.6 149 67.8
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 2.4e-47 192.6 131 67.2
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 2.4e-47 192.6 126 73.8
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 3.2e-47 192.2 117 80.3
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 5.4e-47 191.4 154 64.3
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 5.4e-47 191.4 118 75.4
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 5.4e-47 191.4 144 63.9
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 7.1e-47 191.0 151 64.9
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 4.6e-46 188.3 169 59.8
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 6.0e-46 188.0 96 85.4
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 7.8e-46 187.6 111 75.7
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 3.0e-45 185.7 98 84.7
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 4.3e-44 181.8 97 77.3
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 4.3e-44 181.8 194 50.5
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 9.5e-44 180.6 97 84.5
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 6.2e-43 177.9 106 75.5
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 1.4e-42 176.8 100 79.0
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 8.9e-42 174.1 97 79.4
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 2.6e-41 172.6 93 81.7
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 3.2e-39 165.6 93 78.5
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 7.1e-39 164.5 121 64.5
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 6.0e-38 161.4 114 70.2
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.5e-36 156.8 93 75.3
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.8e-35 152.5 132 58.3
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 3.6e-35 152.1 132 58.3
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 1.1e-34 150.6 88 78.4
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 2.2e-32 142.9 114 63.2
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 3.2e-31 139.0 99 61.6
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.5e-28 129.4 115 60.0
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 3.1e-26 122.5 65 84.6
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 9.3e-23 110.9 75 64.0
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 1.9e-20 103.2 110 51.8
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 2.1e-19 99.8 65 64.6
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 5.6e-12 75.1 36 94.4
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 3.7e-11 72.4 35 94.3


User provided reference genes

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