Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.6e-91 339.3 169 100.0
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 4.5e-89 331.3 169 96.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.0e-88 330.1 169 95.9
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 8.7e-85 317.0 169 92.3
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.6e-83 312.8 169 92.3
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.0e-77 293.5 161 88.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 3.9e-77 291.6 168 85.7
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.9e-77 291.6 149 94.0
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 5.1e-77 291.2 161 87.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.5e-76 289.7 160 86.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.5e-76 289.7 166 85.5
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-76 289.7 163 84.7
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.5e-76 289.7 168 85.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.0e-76 289.3 161 86.3
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.5e-76 288.9 169 84.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 4.3e-76 288.1 164 84.8
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.3e-76 288.1 160 86.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.3e-76 288.1 160 86.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 4.3e-76 288.1 169 82.8
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 4.3e-76 288.1 149 91.3
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 5.7e-76 287.7 168 82.7
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 5.7e-76 287.7 161 85.1
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 5.7e-76 287.7 155 89.0
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 7.4e-76 287.3 160 86.2
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 7.4e-76 287.3 160 86.2
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-75 286.6 168 82.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-75 286.6 163 84.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-75 286.6 161 85.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.7e-75 286.2 178 80.9
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.7e-75 286.2 163 84.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.7e-75 286.2 169 84.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 83.3
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.8e-75 285.4 161 83.9
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-75 285.0 155 87.7
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.7e-75 285.0 172 83.1
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 6.3e-75 284.3 163 83.4
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 6.3e-75 284.3 155 87.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 155 87.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 155 87.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.3e-75 284.3 159 87.4
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.2e-75 283.9 155 87.1
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.2e-75 283.9 155 87.1
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 8.2e-75 283.9 155 86.5
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.4e-74 283.1 160 83.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.4e-74 283.1 155 87.7
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.8e-74 282.7 155 86.5
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-74 282.7 164 84.1
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.4e-74 282.3 162 82.7
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.4e-74 282.3 164 82.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.4e-74 282.3 155 87.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.4e-74 282.3 165 81.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.1e-74 281.6 160 84.4
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.1e-74 281.6 160 83.8
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.3e-74 281.2 160 83.8
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.3e-74 281.2 160 83.8
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.3e-74 281.2 161 82.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.3e-74 281.2 165 80.6
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.9e-74 280.8 152 88.2
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 6.9e-74 280.8 160 83.1
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 9.1e-74 280.4 161 83.2
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 9.1e-74 280.4 163 82.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-73 280.0 150 88.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.2e-73 280.0 165 81.2
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.2e-73 280.0 168 81.5
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.5e-73 279.6 160 83.1
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.0e-73 279.3 161 82.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.0e-73 279.3 166 83.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.6e-73 278.9 165 80.0
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.6e-73 278.9 156 85.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.6e-73 278.9 161 82.0
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.6e-73 278.9 161 82.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.6e-73 278.9 152 87.5
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 3.4e-73 278.5 155 85.8
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.4e-73 278.5 161 82.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.4e-73 278.5 160 83.1
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 5.9e-73 277.7 155 85.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.9e-73 277.7 155 85.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.7e-73 277.3 150 86.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.3e-72 276.6 152 86.8
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.3e-72 276.6 169 81.7
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.3e-72 276.6 160 81.2
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.7e-72 276.2 163 81.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.2e-72 275.8 165 83.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 2.9e-72 275.4 167 79.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 2.9e-72 275.4 162 84.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 2.9e-72 275.4 170 78.2
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.8e-72 275.0 164 81.7
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.8e-72 275.0 150 86.7
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 5.0e-72 274.6 168 81.0
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 6.5e-72 274.2 150 85.3
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 8.5e-72 273.9 150 86.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 8.5e-72 273.9 165 79.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 155 82.6
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 155 82.6
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-71 273.5 161 80.1
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.4e-71 273.1 165 81.2
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.4e-71 273.1 155 83.9
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.9e-71 272.7 152 85.5
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.5e-71 272.3 152 84.2
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.2e-71 271.6 146 89.0
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.2e-71 271.6 171 77.2
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 7.2e-71 270.8 152 86.2
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 9.4e-71 270.4 158 82.9
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.2e-70 270.0 151 84.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.2e-70 270.0 155 82.6
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.7e-70 268.9 149 84.6
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 4.7e-70 268.1 164 79.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.9e-70 267.3 163 79.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.9e-70 267.3 163 79.8
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 7.9e-70 267.3 167 78.4
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 7.9e-70 267.3 167 78.4
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 7.9e-70 267.3 165 80.6
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 7.9e-70 267.3 155 81.9
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.3e-69 265.8 162 80.9
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.0e-69 265.4 149 83.9
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 8.8e-69 263.8 155 80.0
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 8.8e-69 263.8 164 81.1
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 8.8e-69 263.8 165 77.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-68 263.5 163 79.8
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.1e-68 263.5 149 83.2
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.1e-68 263.5 164 81.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.5e-68 263.1 152 84.2
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 164 80.5
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.6e-68 262.3 166 76.5
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 3.3e-68 261.9 149 84.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.3e-68 261.9 159 79.2
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.4e-68 261.5 166 74.7
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.8e-67 258.8 161 77.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.4e-66 256.5 152 82.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.4e-66 255.8 223 60.1
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.3e-66 254.6 152 82.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 152 81.6
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 7.7e-65 250.8 161 75.2
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.2e-64 249.2 146 78.1
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.9e-64 248.8 161 73.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.9e-64 248.8 162 74.7
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.6e-62 243.0 160 72.5
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.7e-59 231.9 152 73.7
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-58 229.6 132 81.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.7e-56 223.0 160 68.8
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.5e-55 219.9 118 86.4
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.0e-54 214.2 123 82.9
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 8.8e-53 210.7 155 61.9
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.4e-50 203.4 132 74.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-45 187.2 110 78.2
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 3.0e-45 185.7 134 65.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.7e-44 181.4 166 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.3e-43 180.3 134 62.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.1e-42 177.2 133 60.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 3.1e-42 175.6 108 83.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.1e-42 175.6 134 61.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 7.7e-41 171.0 127 64.6
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.8e-37 159.8 112 74.1
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.0e-37 159.1 163 55.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 3.4e-36 155.6 88 89.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 5.4e-34 148.3 120 56.7
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.0e-33 146.4 86 86.0
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 9.8e-28 127.5 98 68.4
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-27 127.1 99 62.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.7e-27 126.7 105 66.7
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.6e-25 118.6 136 42.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.6e-24 114.8 174 38.5
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.5e-23 113.6 71 78.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.6e-23 111.7 164 44.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-22 110.5 123 43.1
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-22 110.5 123 43.1
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 8.0e-22 107.8 56 85.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-20 101.7 61 68.9
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.3e-19 100.5 56 76.8
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 6.6e-16 88.2 60 68.3
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 6.6e-16 88.2 55 78.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 8.6e-16 87.8 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 8.6e-16 87.8 96 42.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 9.5e-15 84.3 95 41.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.8e-12 75.1 60 55.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 2.4e-10 69.7 95 41.1


User provided reference genes

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