Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.8e-205 718.4 358 100.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.7e-162 576.2 358 80.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 5.6e-158 561.2 358 77.9
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.2e-155 553.5 360 78.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 9.1e-108 394.4 359 57.7
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.7e-107 392.9 355 57.7
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.7e-104 382.1 354 57.1
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.8e-103 380.2 391 52.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.3e-103 379.8 362 56.4
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.4e-102 375.9 320 59.7
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 4.4e-102 375.6 362 56.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 7.5e-102 374.8 355 56.9
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 7.5e-102 374.8 382 54.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.7e-101 373.6 326 59.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.8e-101 372.1 364 54.1
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.8e-100 370.2 352 54.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 3.1e-100 369.4 335 58.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.1e-100 369.4 289 62.6
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 5.4e-100 368.6 358 56.1
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.2e-99 367.5 320 58.8
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.6e-99 367.1 320 58.4
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.7e-99 366.3 344 56.1
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.5e-99 365.9 368 54.1
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.0e-98 364.4 353 54.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.3e-98 364.0 356 54.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.7e-98 363.6 361 55.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.8e-98 362.5 353 55.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.5e-98 361.7 354 53.1
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.6e-98 361.3 316 57.3
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 8.6e-98 361.3 316 57.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.5e-97 360.5 356 54.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.5e-97 360.5 357 53.2
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 3.6e-96 355.9 362 51.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.0e-96 354.8 355 54.1
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-95 354.4 352 54.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-95 354.4 352 54.5
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 5.2e-95 352.1 354 54.0
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 5.2e-95 352.1 366 51.4
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 8.9e-95 351.3 417 48.0
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-94 350.9 370 52.7
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-94 350.5 370 52.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 3.4e-94 349.4 325 57.8
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.4e-94 349.0 357 52.7
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 7.5e-94 348.2 361 52.4
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.5e-94 348.2 355 53.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 7.5e-94 348.2 355 54.1
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 9.8e-94 347.8 359 51.8
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.7e-93 347.1 287 59.9
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.2e-93 346.7 328 55.8
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.7e-93 345.9 229 70.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 4.9e-93 345.5 364 53.3
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.3e-93 345.1 359 52.9
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.3e-93 345.1 359 52.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 6.3e-93 345.1 360 51.9
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.1e-92 344.4 354 52.8
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.8e-92 343.6 359 52.6
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.1e-92 342.4 333 55.9
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 4.1e-92 342.4 352 52.3
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.1e-92 342.4 354 52.0
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.2e-91 340.9 311 55.0
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.2e-91 340.9 364 52.5
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 2.0e-91 340.1 354 51.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-91 340.1 281 58.7
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.0e-90 337.8 354 54.0
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.3e-90 336.7 353 52.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.9e-90 336.3 352 52.3
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.8e-90 335.9 367 51.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 3.8e-90 335.9 324 54.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 6.6e-90 335.1 355 51.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.6e-90 335.1 354 50.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 8.6e-90 334.7 324 53.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.1e-89 334.3 420 46.4
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.5e-89 334.0 361 51.8
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.9e-89 333.6 329 54.7
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.9e-89 333.6 353 51.6
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.9e-89 333.6 280 57.5
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.5e-89 333.2 341 54.5
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 3.3e-89 332.8 359 51.5
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.3e-89 332.8 356 51.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 4.3e-89 332.4 354 51.4
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.3e-89 332.4 354 51.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 4.3e-89 332.4 337 55.2
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.1e-88 330.1 361 51.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.6e-88 329.3 307 55.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.1e-88 328.6 361 50.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.8e-87 327.0 343 52.2
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.3e-87 326.6 316 53.5
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-86 324.3 265 60.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-86 324.3 293 57.0
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.5e-86 323.9 316 53.2
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.0e-86 323.6 318 52.5
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 3.4e-86 322.8 280 56.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 9.8e-86 321.2 322 54.7
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.3e-85 320.9 402 46.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.3e-85 320.9 280 58.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.2e-85 320.1 264 60.2
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 2.2e-85 320.1 302 55.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 2.9e-85 319.7 280 58.2
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.9e-85 318.9 385 46.8
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.4e-84 317.4 306 52.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.4e-84 317.4 362 48.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.4e-84 316.6 264 59.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 3.5e-83 312.8 322 53.4
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 3.5e-83 312.8 307 53.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 6.0e-83 312.0 380 47.1
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.5e-81 307.4 356 49.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.9e-81 307.0 239 63.6
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.5e-81 306.6 254 59.8
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.8e-80 303.1 282 53.9
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.3e-79 300.1 373 46.9
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.9e-77 293.1 226 63.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 9.2e-76 288.1 400 42.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.0e-75 285.4 365 43.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.5e-73 280.8 366 45.9
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-72 277.7 237 58.2
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-70 270.4 235 55.7
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 9.2e-68 261.5 231 59.7
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.6e-67 260.8 311 44.4
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.0e-66 258.1 234 55.1
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.3e-65 253.1 214 57.9
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.1e-63 246.5 281 46.6
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.9e-61 239.2 211 56.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 4.6e-59 232.6 277 43.3
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.3e-58 231.1 272 44.9
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.9e-58 229.6 217 55.8
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.6e-56 223.0 194 59.8
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.4e-55 221.1 268 42.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.4e-55 221.1 268 42.2
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 9.0e-55 218.4 248 47.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.9e-52 210.7 159 62.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.7e-50 204.1 161 63.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.3e-49 199.9 309 34.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-48 197.6 144 62.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.1e-48 197.2 212 49.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 6.7e-42 175.6 165 55.2
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.4e-39 167.9 226 40.3
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.7e-37 161.0 116 67.2
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.7e-37 161.0 271 33.6
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.0e-34 151.8 199 48.2
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.8e-34 151.0 312 34.9
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.1e-34 149.4 193 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.1e-32 144.1 244 39.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.0e-31 139.8 103 60.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-25 121.7 189 39.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.2e-20 103.2 75 60.0
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 5.5e-20 102.8 105 47.6
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 2.1e-19 100.9 182 41.2
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 4.3e-17 93.2 203 36.9
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.2e-16 90.9 76 61.8
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.4e-15 87.4 90 47.8
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.1e-15 87.0 74 52.7
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.2e-12 76.6 176 31.8
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.0e-09 67.8 164 36.6
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.0e-09 67.8 35 80.0
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.3e-08 65.1 112 41.1
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 6.3e-08 62.8 200 29.5
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 7.0e-07 59.3 38 71.1


User provided reference genes

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