Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 0.0e+00 1554.3 819 100.0
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 0.0e+00 1191.8 826 80.0
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 0.0e+00 1174.5 825 79.0
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.2e-311 1072.0 824 73.5
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 9.2e-297 1023.5 830 71.6
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.3e-178 630.9 825 48.8
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 3.1e-175 619.8 828 48.8
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.6e-171 607.4 823 48.2
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.6e-171 607.4 824 47.7
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 4.6e-171 605.9 830 47.2
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.9e-170 602.8 827 48.0
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 5.2e-167 592.4 835 46.5
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.2e-166 591.3 837 47.2
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.7e-165 586.3 824 48.7
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 4.1e-164 582.8 827 46.2
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.1e-164 582.8 821 47.0
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 5.6e-161 572.4 826 45.0
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 8.1e-160 568.5 827 46.8
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.1e-160 568.5 826 47.0
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.1e-159 568.2 830 45.1
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.8e-159 567.4 828 45.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 5.2e-159 565.8 822 45.6
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 2.6e-158 563.5 824 46.5
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.7e-157 560.8 751 47.4
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.7e-157 560.8 826 45.5
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.2e-157 560.5 819 44.4
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 9.2e-156 555.1 826 45.2
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 9.2e-156 555.1 813 45.1
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.3e-154 551.2 779 47.5
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 3.9e-154 549.7 825 45.6
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 5.1e-154 549.3 826 44.7
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 9.6e-153 545.0 842 44.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.7e-152 542.7 822 45.1
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 8.1e-152 542.0 829 44.6
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.4e-151 541.2 811 44.6
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.8e-151 540.8 827 42.9
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 6.8e-151 538.9 844 43.7
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.2e-150 538.1 820 44.5
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.2e-150 538.1 820 45.0
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.2e-150 538.1 828 43.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.6e-150 535.4 830 44.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-149 534.6 820 44.9
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 2.9e-149 533.5 843 43.4
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.9e-149 532.7 811 44.5
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-148 531.6 822 44.9
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.4e-148 531.2 824 44.7
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 2.4e-148 530.4 828 45.2
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.6e-147 526.2 811 43.9
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.3e-146 524.6 821 43.8
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.5e-145 521.2 842 42.8
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.3e-145 520.0 837 44.3
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 2.4e-143 513.8 831 42.4
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 4.4e-142 509.6 831 42.5
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.9e-137 494.2 841 41.6
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.9e-137 494.2 823 43.6
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 9.0e-135 485.3 732 45.4
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 5.8e-134 482.6 841 43.3
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 7.6e-134 482.3 830 41.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.3e-133 481.5 836 41.9
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 8.4e-133 478.8 835 40.0
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 7.1e-132 475.7 846 40.3
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 2.1e-128 464.2 851 42.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.8e-128 463.8 676 46.9
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 6.9e-127 459.1 750 45.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 2.9e-125 453.8 750 42.1
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 3.2e-124 450.3 827 40.3
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-123 448.0 827 40.0
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.6e-123 446.4 846 39.2
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.8e-122 444.5 823 38.6
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 6.7e-122 442.6 929 37.0
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 7.4e-121 439.1 824 39.1
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 2.1e-120 437.6 833 40.8
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.4e-119 434.1 814 38.6
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 7.6e-118 429.1 827 38.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.7e-117 427.9 825 38.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.1e-116 425.2 886 38.0
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.5e-116 424.1 853 38.0
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.6e-115 419.9 823 39.9
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.0e-114 418.7 833 38.7
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.3e-114 418.3 824 37.9
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 1.6e-112 411.4 638 44.7
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.2e-112 411.0 794 38.3
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 6.3e-112 409.5 847 36.1
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.4e-111 408.3 821 37.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 4.5e-110 403.3 832 37.5
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.2e-109 401.0 824 37.4
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.0e-109 399.8 823 38.3
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 1.1e-108 398.7 825 37.8
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 2.7e-107 394.0 748 39.0
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 2.7e-107 394.0 850 36.6
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 4.6e-107 393.3 755 38.7
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.3e-106 391.0 833 37.8
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 5.1e-106 389.8 827 38.3
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 3.3e-105 387.1 829 38.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.7e-104 383.6 833 36.6
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 8.2e-104 382.5 831 36.7
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 5.3e-103 379.8 823 36.6
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 7.7e-102 375.9 737 38.7
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.3e-101 375.2 902 34.1
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.2e-101 374.4 854 35.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 6.1e-99 366.3 891 35.4
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 6.1e-99 366.3 680 38.2
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 5.7e-97 359.8 832 36.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.1e-95 355.5 921 33.8
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.6e-94 351.7 832 34.7
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.0e-93 349.0 754 37.3
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 3.8e-93 347.1 764 36.3
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.0e-93 346.7 746 39.3
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 6.5e-93 346.3 816 34.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 4.2e-92 343.6 768 34.5
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.3e-90 337.8 760 37.1
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 2.8e-88 330.9 797 34.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 1.4e-87 328.6 797 33.9
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.2e-86 325.5 798 32.5
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.5e-86 323.9 820 34.4
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 3.5e-86 323.9 840 36.9
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 4.5e-86 323.6 798 34.0
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.0e-85 322.4 765 35.8
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.0e-85 322.4 798 33.2
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.3e-85 322.0 799 34.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.9e-85 320.9 839 32.8
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 5.5e-84 316.6 795 33.3
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.2e-83 315.5 799 32.7
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.6e-83 315.1 740 36.2
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 3.6e-83 313.9 802 34.0
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 4.7e-83 313.5 799 33.0
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 6.1e-83 313.2 901 32.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 4.0e-82 310.5 374 47.6
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.2e-82 310.1 796 34.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.5e-81 308.5 796 32.2
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.4e-81 307.4 286 59.1
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 7.5e-81 306.2 702 33.9
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 3.1e-79 300.8 268 57.1
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 7.0e-79 299.7 796 33.4
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.2e-78 298.9 795 31.8
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 7.7e-78 296.2 831 31.3
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.8e-71 275.0 220 65.9
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 9.2e-71 272.7 290 51.4
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.5e-68 265.4 281 50.9
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.1e-67 260.0 369 42.0
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.0e-66 257.7 286 52.4
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.8e-63 248.4 443 39.1
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 3.9e-61 240.7 245 53.9
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 6.6e-61 240.0 697 30.8
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 8.6e-61 239.6 272 48.5
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-60 239.2 837 32.1
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.9e-60 238.4 374 40.9
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 8.0e-59 233.0 211 58.8
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 2.0e-57 228.4 227 52.9
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 9.8e-57 226.1 728 30.5
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 6.6e-53 213.4 261 46.4
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.5e-52 212.2 223 48.9
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.1e-47 196.1 224 46.9
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.9e-47 195.3 139 71.2
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 7.3e-44 183.3 611 31.1
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.5e-38 164.5 149 60.4
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 8.9e-34 149.8 227 41.0
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.7e-30 138.3 445 33.0
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.1e-28 132.9 180 45.6
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.6e-28 130.6 267 34.1
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.6e-25 121.7 125 52.0
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 7.6e-25 120.2 466 34.1
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 3.2e-23 114.8 432 30.6
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.4e-23 114.0 455 31.4
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 6.0e-22 110.5 309 31.1
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.0e-21 108.2 102 58.8
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.9e-21 107.8 218 34.4
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.4e-16 90.5 69 68.1
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 7.9e-14 83.6 81 58.0
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.5e-12 79.3 60 61.7
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.5e-12 78.6 54 74.1
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.8e-11 75.1 106 48.1
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.2e-09 69.7 60 50.0
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 5.8e-09 67.4 113 38.1
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 6.5e-08 63.9 196 28.6
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.6e-06 59.3 196 29.6
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.5e-06 58.2 114 35.1


User provided reference genes

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