Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008040 Citrullus lanatus HOM05D025135 ORTHO05D019014 9.3e-60 233.4 124 100.0
CsaV3_3G017090 Cucumis sativus L. HOM05D001293 ORTHO05D019014 2.0e-30 136.0 95 80.0
MELO3C006905.2 Cucumis melo HOM05D025135 ORTHO05D019014 1.6e-19 99.8 67 82.1
Thecc.03G176200 Theobroma cacao HOM05D001293 ORTHO05D019014 4.1e-15 85.1 92 50.0
MD07G1268300 Malus domestica HOM05D025135 ORTHO05D019014 2.9e-13 79.0 92 51.1
Potri.012G140900 Populus trichocarpa HOM05D001293 ORTHO05D019014 9.4e-12 73.9 95 45.3
C08p23900 Brassica napus HOM05D001293 ORTHO05D001143 2.1e-11 72.8 90 47.8
Cfa008315 Carpinus fangiana HOM05D001293 ORTHO05D001143 4.7e-11 71.6 93 46.2
Thhalv10010917m.g Eutrema salsugineum HOM05D001293 ORTHO05D001143 8.0e-11 70.9 88 46.6
Lj1P997T28 Lonicera japonica HOM05D001293 ORTHO05D001143 1.0e-10 70.5 90 46.7
Actinidia34110 Actinidia chinensis HOM05D001293 ORTHO05D001143 1.8e-10 69.7 90 46.7
Hma1.2p1_1943F.1_g308490 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 1.8e-10 69.7 90 43.3
Eucgr.E00569 Eucalyptus grandis HOM05D001293 ORTHO05D001143 2.3e-10 69.3 89 44.9
Lj8A25T66 Lonicera japonica HOM05D001293 ORTHO05D001143 3.0e-10 68.9 90 45.6
MBI18_g09034_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 4.0e-10 68.6 93 44.1
Eucgr.A02795 Eucalyptus grandis HOM05D001293 ORTHO05D001143 5.2e-10 68.2 96 47.9
Sabra14G0059200 Salix brachista HOM05D001293 ORTHO05D001143 5.2e-10 68.2 90 43.3
VMungo1215G0745 Vigna mungo HOM05D001293 ORTHO05D001143 5.2e-10 68.2 99 41.4
ECA233G2773 Erigeron canadensis HOM05D001293 ORTHO05D001143 1.5e-09 66.6 93 44.1
Gohir.A12G226800 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.0e-09 66.2 93 44.1
MELO3C006904.2 Cucumis melo HOM05D001293 ORTHO05D001143 2.6e-09 65.9 73 56.2
ClCG05G008030 Citrullus lanatus HOM05D001293 ORTHO05D001143 3.4e-09 65.5 73 53.4
CiPaw.11G138200 Carya illinoinensis HOM05D001293 ORTHO05D001143 4.4e-09 65.1 92 43.5
Gohir.D12G229200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 4.4e-09 65.1 93 43.0
Gorai.008G245400 Gossypium raimondii HOM05D001293 ORTHO05D001143 4.4e-09 65.1 93 43.0
Lsat_1_v5_gn_6_5760 Lactuca sativa HOM05D001293 ORTHO05D001143 4.4e-09 65.1 93 44.1
HanXRQChr07g0187071 Helianthus annuus HOM05D001293 ORTHO05D001143 5.7e-09 64.7 93 41.9
EL10Ac5g12774 Beta vulgaris HOM05D001293 ORTHO05D001143 9.8e-09 63.9 90 41.1
Duzib205G0129 Durio zibethinus HOM05D001293 ORTHO05D001143 1.3e-08 63.5 73 54.8
Gohir.A08G099500 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.2e-08 62.8 75 49.3
Lalb_Chr06g0161121 Lupinus albus HOM05D001293 ORTHO05D001143 2.2e-08 62.8 90 45.6
MSTRG.13834 Avicennia marina HOM05D001293 ORTHO05D001143 2.8e-08 62.4 88 44.3
Ca_10773_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 2.8e-08 62.4 91 45.1
Hma1.2p1_1438F.1_g283380 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 2.8e-08 62.4 78 50.0
TAR636G2976 Trochodendron aralioides HOM05D001293 ORTHO05D001143 3.7e-08 62.0 93 41.9
MD07G1268200 Malus domestica HOM05D001293 ORTHO05D001143 4.9e-08 61.6 77 49.4
Os02g0642200 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 4.9e-08 61.6 93 41.9
Haze_08887 Corylus avellana HOM05D001293 ORTHO05D001143 6.3e-08 61.2 90 40.0
Haze_08890 Corylus avellana HOM05D001293 ORTHO05D001143 6.3e-08 61.2 90 40.0
CSS0041072 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 8.3e-08 60.8 74 51.4
Duzib068G0884 Durio zibethinus HOM05D001293 ORTHO05D001143 8.3e-08 60.8 73 52.1
Phvul.008G067400 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 8.3e-08 60.8 77 49.4
COL.COLO4_14305 Corchorus olitorius HOM05D001293 ORTHO05D001143 1.1e-07 60.5 73 52.1
Eucgr.D02272 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.1e-07 60.5 79 45.6
Gohir.D08G110900 Gossypium hirsutum HOM05D001293 ORTHO05D001143 1.1e-07 60.5 73 50.7
Gorai.004G118800 Gossypium raimondii HOM05D001293 ORTHO05D001143 1.1e-07 60.5 73 50.7
Medtr1g100647 Medicago truncatula HOM05D001293 ORTHO05D001143 1.1e-07 60.5 74 51.4
Prupe.2G294000 Prunus persica HOM05D025135 ORTHO05D019014 1.1e-07 60.5 94 41.5
AUR62015367 Chenopodium quinoa HOM05D001293 ORTHO05D001143 1.4e-07 60.1 83 44.6
Eucgr.K00253 Eucalyptus grandis HOM05D001293 ORTHO05D001143 1.8e-07 59.7 95 36.8
arahy.Tifrunner.gnm1.ann1.EZ474E Arachis hypogaea HOM05D000254 ORTHO05D000165 2.4e-07 59.3 95 37.9
Ciclev10005899m.g Citrus clementina HOM05D001293 ORTHO05D001143 2.4e-07 59.3 76 51.3
FAN04G2978 Fragaria x ananassa HOM05D001293 ORTHO05D001143 2.4e-07 59.3 88 35.2
Glyma.03G013400 Glycine max HOM05D001293 ORTHO05D001143 2.4e-07 59.3 110 36.4
MSTRG.27117 Avicennia marina HOM05D001293 ORTHO05D001143 5.4e-07 58.2 71 52.1
HPP92_026757 Vanilla planifolia HOM05D001293 ORTHO05D001143 5.4e-07 58.2 73 46.6
Migut.F01121 Erythranthe guttata HOM05D001293 ORTHO05D001143 7.0e-07 57.8 133 32.3
Glyma.05G205900 Glycine max HOM05D001293 ORTHO05D001143 7.0e-07 57.8 93 39.8
Glyma.08G012800 Glycine max HOM05D001293 ORTHO05D001143 7.0e-07 57.8 93 39.8
Prupe.2G293900 Prunus persica HOM05D001293 ORTHO05D001143 7.0e-07 57.8 73 49.3
TWI39G1206 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 7.0e-07 57.8 72 51.4
Dinv28445 Davidia involucrata HOM05D001293 ORTHO05D001143 9.2e-07 57.4 74 48.6
Dinv35211 Davidia involucrata HOM05D001293 ORTHO05D001143 9.2e-07 57.4 71 49.3
Potri.012G140800 Populus trichocarpa HOM05D001293 ORTHO05D001143 9.2e-07 57.4 71 50.7
THA.LOC104817285 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 9.2e-07 57.4 73 49.3
unitig_0.g2483 Utricularia gibba HOM05D001293 ORTHO05D001143 9.2e-07 57.4 71 52.1
HPP92_005061 Vanilla planifolia HOM05D001293 ORTHO05D001143 9.2e-07 57.4 71 49.3
Glyma.11G025200 Glycine max HOM05D001293 ORTHO05D001143 1.2e-06 57.0 93 38.7
HanXRQChr09g0253541 Helianthus annuus HOM05D001293 ORTHO05D001143 1.2e-06 57.0 87 44.8
Manes.14G026100 Manihot esculenta HOM05D001293 ORTHO05D001143 1.2e-06 57.0 72 50.0
Nitab4.5_0004193g0010 Nicotiana tabacum HOM05D001293 ORTHO05D001143 1.2e-06 57.0 71 50.7
Thecc.03G176100 Theobroma cacao HOM05D001293 ORTHO05D001143 1.2e-06 57.0 72 51.4
MSTRG.92 Avicennia marina HOM05D001293 ORTHO05D001143 1.6e-06 56.6 69 50.7
CSS0048973 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 1.6e-06 56.6 71 50.7
ClCG09G012980 Citrullus lanatus HOM05D001293 ORTHO05D001143 1.6e-06 56.6 110 37.3
DCAR_006917 Daucus carota HOM05D001293 ORTHO05D001143 1.6e-06 56.6 113 35.4
Migut.F00343 Erythranthe guttata HOM05D001293 ORTHO05D001143 1.6e-06 56.6 71 49.3
Psat3g110560 Pisum sativum HOM05D001293 ORTHO05D001143 1.6e-06 56.6 110 39.1
QL09p014264 Quercus lobata HOM05D001293 ORTHO05D001143 1.6e-06 56.6 70 50.0
QL93p1873_0031 Quercus lobata HOM05D001293 ORTHO05D001143 1.6e-06 56.6 70 50.0
TWI23G0948 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 1.6e-06 56.6 71 50.7
CANSAT21G1207 Cannabis sativa HOM05D001293 ORTHO05D001143 2.0e-06 56.2 110 37.3
Dinv38963 Davidia involucrata HOM05D001293 ORTHO05D001143 2.0e-06 56.2 110 39.1
Os04g0533300 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 2.0e-06 56.2 93 41.9
SalBow4G0351 Salvia bowleyana HOM05D001293 ORTHO05D001143 2.0e-06 56.2 73 50.7
SalBow4G1466 Salvia bowleyana HOM05D001293 ORTHO05D001143 2.0e-06 56.2 73 50.7
TAR374G0925 Trochodendron aralioides HOM05D001293 ORTHO05D001143 2.0e-06 56.2 78 46.2
Carub.0005s1512 Capsella rubella HOM05D001293 ORTHO05D001143 2.7e-06 55.8 69 50.7
Cfa012145 Carpinus fangiana HOM05D001293 ORTHO05D001143 2.7e-06 55.8 90 38.9
CiPaw.03G106000 Carya illinoinensis HOM05D001293 ORTHO05D001143 2.7e-06 55.8 72 48.6
DCAR_009365 Daucus carota HOM05D001293 ORTHO05D001143 2.7e-06 55.8 71 49.3
Eucgr.A02793 Eucalyptus grandis HOM05D001293 ORTHO05D001143 2.7e-06 55.8 73 49.3
Glyma.10G236300 Glycine max HOM05D001293 ORTHO05D001143 2.7e-06 55.8 70 48.6
QL08p049449 Quercus lobata HOM05D001293 ORTHO05D001143 2.7e-06 55.8 72 47.2
AL5G28450 Arabidopsis lyrata HOM05D001293 ORTHO05D001143 3.5e-06 55.5 72 47.2
FAN13G0042 Fragaria x ananassa HOM05D001293 ORTHO05D001143 3.5e-06 55.5 92 35.9
Glyma.18G230500 Glycine max HOM05D001293 ORTHO05D001143 3.5e-06 55.5 110 37.3
Gorai.007G097700 Gossypium raimondii HOM05D001293 ORTHO05D001143 3.5e-06 55.5 73 47.9
Manes.06G146800 Manihot esculenta HOM05D001293 ORTHO05D001143 3.5e-06 55.5 72 48.6
Medtr7g076730 Medicago truncatula HOM05D001293 ORTHO05D001143 3.5e-06 55.5 110 37.3
Phvul.002G287608 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 3.5e-06 55.5 114 33.3
SGA_v2.0_scaffold113G31739 Striga asiatica HOM05D001293 ORTHO05D001143 3.5e-06 55.5 69 49.3
vmacro11307 Vaccinium macrocarpon HOM05D001293 ORTHO05D001143 3.5e-06 55.5 110 34.5
BcaC02g07057 Brassica carinata HOM05D001293 ORTHO05D001143 4.5e-06 55.1 72 45.8
Ca_07895_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 4.5e-06 55.1 107 39.3
Glyma.20G158200 Glycine max HOM05D001293 ORTHO05D001143 4.5e-06 55.1 70 48.6
Psat6g199640 Pisum sativum HOM05D001293 ORTHO05D001143 4.5e-06 55.1 73 46.6
Sed0002472 Sechium edule HOM05D001293 ORTHO05D001143 4.5e-06 55.1 71 47.9
Hund11488 Selenicereus undatus HOM05D001293 ORTHO05D001143 4.5e-06 55.1 110 33.6
SGA_v2.0_scaffold60G21036 Striga asiatica HOM05D001293 ORTHO05D001143 4.5e-06 55.1 70 51.4
Zm00001eb427400 Zea mays HOM05D001293 ORTHO05D001143 4.5e-06 55.1 74 47.3
CsaV3_3G050040 Cucumis sativus L. HOM05D001293 ORTHO05D001143 5.9e-06 54.7 110 35.5
FAN08G1944 Fragaria x ananassa HOM05D001293 ORTHO05D001143 5.9e-06 54.7 85 36.5
Nitab4.5_0000716g0040 Nicotiana tabacum HOM05D001293 ORTHO05D001143 5.9e-06 54.7 71 49.3
SGA_v2.0_scaffold799G53615 Striga asiatica HOM05D001293 ORTHO05D001143 5.9e-06 54.7 70 50.0
HPP92_022559 Vanilla planifolia HOM05D001293 ORTHO05D001143 5.9e-06 54.7 76 43.4
Aa31LG4G17450 Aethionema arabicum HOM05D001293 ORTHO05D001143 7.7e-06 54.3 70 48.6
VMungo0720G0217 Vigna mungo HOM05D001293 ORTHO05D001143 7.7e-06 54.3 70 48.6


User provided reference genes

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