Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 7.3e-130 469.2 903 100.0
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 6.1e-76 290.0 214 76.6
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.8e-72 278.5 217 76.5
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 9.8e-66 256.1 211 69.2
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 2.1e-31 142.1 160 45.0
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 1.3e-30 139.4 149 51.0
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 2.3e-30 138.7 215 40.5
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 3.9e-30 137.9 160 45.0
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 8.6e-30 136.7 170 47.6
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.3e-29 134.8 166 46.4
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.3e-29 134.8 170 47.1
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.6e-29 133.3 139 53.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 9.6e-29 133.3 183 42.1
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 2.8e-28 131.7 215 39.1
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 2.6e-26 125.2 128 50.0
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 3.4e-26 124.8 155 46.5
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 3.4e-26 124.8 213 35.7
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.4e-25 120.2 170 42.9
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 7.1e-24 117.1 138 41.3
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 2.7e-23 115.2 123 49.6
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 1.1e-21 109.8 161 39.1
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 4.3e-21 107.8 140 40.0
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 9.6e-21 106.7 129 44.2
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 8.1e-20 103.6 136 40.4
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 1.8e-19 102.4 161 36.6
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 2.4e-19 102.1 138 37.0
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 3.1e-19 101.7 139 38.8
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 4.0e-19 101.3 155 34.8
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 4.0e-19 101.3 171 39.2
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 5.3e-19 100.9 145 38.6
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 5.3e-19 100.9 145 39.3
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 9.0e-19 100.1 147 39.5
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.5e-18 99.4 139 38.1
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 2.0e-18 99.0 158 32.9
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 5.8e-18 97.4 194 33.5
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.3e-17 96.3 170 37.1
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 1.7e-17 95.9 136 40.4
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 2.9e-17 95.1 159 40.3
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 2.4e-16 92.0 135 37.0
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 2.4e-16 92.0 136 39.7
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 4.2e-16 91.3 93 53.8
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 5.4e-16 90.9 130 39.2
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 5.4e-16 90.9 139 34.5
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 9.3e-16 90.1 119 41.2
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 2.7e-15 88.6 136 37.5
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.7e-15 88.6 122 39.3
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 1.3e-14 86.3 119 42.0
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.3e-14 86.3 160 32.5
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 1.7e-14 85.9 161 32.9
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 3.0e-14 85.1 160 33.1
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 3.9e-14 84.7 156 32.1
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 5.1e-14 84.3 152 33.6
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 6.6e-14 84.0 172 31.4
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 1.9e-13 82.4 161 31.7
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 2.5e-13 82.0 119 39.5
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 3.3e-13 81.6 171 31.6
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 9.6e-13 80.1 122 36.1
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 9.6e-13 80.1 122 36.1
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 9.6e-13 80.1 138 30.4
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.6e-12 79.3 143 32.2
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.1e-12 79.0 138 33.3
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 6.2e-12 77.4 103 42.7
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 6.2e-12 77.4 150 34.0
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 6.2e-12 77.4 150 32.0
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 1.4e-11 76.3 154 31.2
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 2.4e-11 75.5 138 37.7
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 3.1e-11 75.1 114 36.0
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 3.1e-11 75.1 128 35.9
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 4.0e-11 74.7 148 33.8
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 4.0e-11 74.7 110 42.7
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 4.0e-11 74.7 162 30.2
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 4.0e-11 74.7 152 34.9
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 6.9e-11 73.9 132 37.9
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 1.2e-10 73.2 157 32.5
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 1.5e-10 72.8 147 31.3
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.6e-10 72.0 82 37.8
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 1.7e-09 69.3 104 40.4
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 2.2e-09 68.9 130 31.5
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 3.8e-09 68.2 100 41.0
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 4.9e-09 67.8 136 33.8
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.4e-08 66.2 103 39.8
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 9.3e-08 63.5 168 29.2
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 2.7e-07 62.0 43 65.1
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 4.6e-07 61.2 43 58.1
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 4.6e-07 61.2 63 46.0
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 4.6e-07 61.2 82 35.4
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 1.0e-06 60.1 53 49.1
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 5.1e-06 57.8 43 53.5


User provided reference genes

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