Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 0.0e+00 1438.3 701 100.0
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 0.0e+00 1176.0 673 87.2
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 0.0e+00 1147.1 701 81.9
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 4.6e-289 997.7 722 70.1
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 2.0e-284 982.2 639 74.0
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 2.6e-284 981.9 630 74.3
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 2.2e-283 978.8 701 69.8
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 4.2e-282 974.5 648 73.1
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 1.2e-281 973.0 645 73.0
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 2.7e-281 971.8 648 72.8
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 7.9e-281 970.3 648 73.5
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.8e-280 969.1 588 78.9
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 1.8e-280 969.1 695 69.2
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 3.9e-280 968.0 713 67.7
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 5.1e-280 967.6 645 73.2
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 1.5e-279 966.1 702 68.9
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 1.3e-278 963.0 637 73.6
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 5.3e-277 957.6 727 66.6
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 9.0e-277 956.8 582 77.3
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 4.5e-276 954.5 602 75.2
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 7.6e-276 953.7 614 73.9
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 1.3e-275 953.0 579 77.7
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 2.9e-275 951.8 593 75.5
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 3.8e-275 951.4 587 76.1
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 4.9e-275 951.0 584 76.4
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.4e-274 949.5 580 77.4
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 1.2e-273 946.4 593 75.5
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 3.5e-273 944.9 593 74.2
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.0e-272 943.3 576 77.4
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 1.5e-271 939.5 697 66.4
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.5e-271 939.5 701 68.6
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.5e-271 939.5 584 75.3
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 1.9e-271 939.1 576 76.4
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 3.3e-271 938.3 589 76.1
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.1e-269 933.3 576 75.2
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 3.1e-269 931.8 632 71.2
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 5.3e-269 931.0 587 74.3
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 9.0e-269 930.2 588 75.0
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 1.5e-268 929.5 678 67.6
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 2.0e-268 929.1 587 74.6
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.0e-268 929.1 588 74.8
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 4.5e-268 927.9 702 65.5
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 3.8e-267 924.9 685 66.9
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 5.0e-267 924.5 587 74.1
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 8.5e-267 923.7 588 73.8
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 8.5e-267 923.7 588 73.8
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 1.1e-266 923.3 687 66.7
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.9e-266 922.5 591 73.4
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 1.9e-266 922.5 587 73.9
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 2.5e-266 922.2 579 74.6
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 3.2e-266 921.8 621 71.3
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 4.2e-266 921.4 691 65.4
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 2.1e-265 919.1 613 72.3
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 2.7e-265 918.7 587 73.4
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 1.0e-264 916.8 740 63.6
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.4e-264 916.4 596 72.0
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 3.0e-264 915.2 690 66.5
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.0e-263 912.5 593 73.5
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 2.2e-262 909.1 576 74.3
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 2.4e-261 905.6 703 64.6
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.2e-260 903.3 646 68.3
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 2.6e-260 902.1 592 72.3
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 2.2e-259 899.0 615 70.4
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 7.2e-258 894.0 626 68.7
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 1.6e-257 892.9 680 66.5
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 4.7e-257 891.3 587 71.6
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 5.1e-256 887.9 650 66.3
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 5.7e-255 884.4 638 66.9
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 1.1e-253 880.2 589 70.1
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.2e-252 876.7 875 56.1
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 4.5e-252 874.8 708 64.0
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.7e-251 872.8 584 69.7
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 1.4e-250 869.8 640 65.9
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 1.0e-248 863.6 647 67.2
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 3.3e-247 858.6 553 72.9
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.8e-246 855.5 558 73.1
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 2.9e-243 845.5 604 67.4
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.1e-241 839.3 588 68.9
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 1.0e-240 837.0 589 69.1
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 4.0e-240 835.1 908 51.5
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 4.5e-236 821.6 596 65.1
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 2.1e-233 812.8 579 66.5
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 6.1e-233 811.2 506 74.3
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 8.8e-232 807.4 517 73.5
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 7.0e-229 797.7 695 60.6
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 1.7e-227 793.1 692 60.4
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 4.5e-220 768.5 595 63.0
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 4.4e-215 751.9 488 78.7
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.7e-214 750.0 471 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 7.8e-212 741.1 534 66.5
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 9.9e-183 644.4 589 53.5
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 8.1e-177 624.8 521 58.7
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 5.3e-176 622.1 408 71.8
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 3.9e-163 579.3 625 49.6
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 9.6e-162 574.7 478 59.0
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.2e-156 557.8 580 50.9
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 3.3e-154 549.7 600 47.0
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 8.2e-153 545.0 598 47.3
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 6.9e-144 515.4 387 64.1
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 8.2e-129 465.3 393 61.1
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 7.2e-117 425.6 492 48.6
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.2e-113 414.1 267 73.4
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 8.9e-99 365.5 201 81.1
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 3.7e-97 360.1 202 80.2
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 9.5e-85 318.9 186 79.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.7e-81 308.1 194 82.0
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.7e-78 298.1 254 62.2
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 1.8e-75 288.1 172 75.0
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 2.4e-75 287.7 170 80.0
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 3.4e-74 283.9 174 77.0
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 7.4e-53 213.0 150 66.7
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 7.1e-48 196.4 116 75.0
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.1e-47 194.9 119 76.5
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.3e-46 191.4 106 84.0
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.1e-35 154.5 143 59.4
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.9e-33 147.9 143 57.3
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.2e-31 142.5 82 75.6
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 7.4e-29 133.3 83 79.5
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.5e-25 119.8 143 51.0
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.5e-25 119.8 143 51.0
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.9e-18 97.1 78 62.8
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 4.7e-15 87.4 56 75.0
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.8e-12 77.4 59 62.7
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 1.8e-11 75.5 54 64.8
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 4.5e-10 70.9 54 63.0
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 8.5e-09 66.6 40 75.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 8.5e-09 66.6 40 75.0
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.2e-08 63.5 98 40.8
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 8.0e-07 60.1 47 57.4
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.4e-06 59.3 34 79.4


User provided reference genes

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