Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 3.2e-40 167.9 82 100.0
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.4e-35 151.8 84 92.9
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.4e-34 147.9 82 87.8
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.2e-33 145.2 82 85.4
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.4e-21 103.6 68 73.5
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 2.8e-20 101.7 82 64.6
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.8e-19 99.0 83 62.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.8e-19 99.0 82 64.6
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.4e-19 98.6 79 65.8
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.1e-19 98.2 75 66.7
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 4.0e-19 97.8 81 60.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 4.0e-19 97.8 82 62.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 4.0e-19 97.8 81 63.0
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 5.3e-19 97.4 82 61.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.3e-19 97.4 82 65.9
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 6.9e-19 97.1 83 60.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 9.0e-19 96.7 82 65.9
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.5e-18 95.9 84 59.5
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.5e-18 95.9 79 64.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.5e-18 95.9 79 64.6
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.0e-18 95.5 82 62.2
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 2.6e-18 95.1 82 63.4
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 5.8e-18 94.0 82 58.5
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 7.6e-18 93.6 82 62.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 7.6e-18 93.6 80 62.5
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.6e-18 93.6 79 63.3
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.3e-17 92.8 92 59.8
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.7e-17 92.4 83 62.7
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-17 92.4 81 58.0
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.7e-17 92.4 81 61.7
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.2e-17 92.0 84 59.5
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.9e-17 91.7 82 58.5
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-17 90.9 81 58.0
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 6.5e-17 90.5 79 60.8
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 6.5e-17 90.5 72 59.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 8.4e-17 90.1 82 58.5
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 8.4e-17 90.1 77 61.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.1e-16 89.7 81 59.3
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.4e-16 89.4 82 59.8
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.9e-16 89.0 76 60.5
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 58.3
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 58.3
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 72 58.3
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.9e-16 89.0 84 59.5
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 84 59.5
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 84 59.5
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-16 89.0 84 59.5
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.9e-16 89.0 82 61.0
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-16 89.0 81 58.0
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.9e-16 89.0 81 58.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.5e-16 88.6 76 60.5
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 56.1
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-16 88.6 72 58.3
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 56.1
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 56.1
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 56.1
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 2.5e-16 88.6 82 56.1
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.2e-16 88.2 72 58.3
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 3.2e-16 88.2 77 58.4
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.2e-16 88.2 82 57.3
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 4.2e-16 87.8 83 59.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-16 87.8 80 56.2
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-16 87.8 72 56.9
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-16 87.8 72 56.9
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 4.2e-16 87.8 72 56.9
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 4.2e-16 87.8 69 60.9
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 4.2e-16 87.8 84 57.1
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 5.5e-16 87.4 72 56.9
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-16 87.4 82 53.7
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-16 87.4 72 56.9
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 5.5e-16 87.4 83 55.4
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 5.5e-16 87.4 83 55.4
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 5.5e-16 87.4 82 53.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 5.5e-16 87.4 77 55.8
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 5.5e-16 87.4 82 56.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 9.3e-16 86.7 88 56.8
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-16 86.7 83 54.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 9.3e-16 86.7 81 54.3
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 9.3e-16 86.7 81 56.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 9.3e-16 86.7 82 57.3
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-15 86.3 83 54.2
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-15 86.3 83 54.2
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-15 86.3 72 56.9
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-15 86.3 81 55.6
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-15 86.3 81 55.6
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.2e-15 86.3 84 57.1
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.2e-15 86.3 82 54.9
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-15 85.5 72 56.9
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-15 85.5 72 56.9
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-15 85.5 72 56.9
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.7e-15 85.1 82 53.7
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.7e-15 85.1 72 56.9
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.5e-15 84.7 79 57.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.5e-15 84.7 83 57.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-15 84.7 72 56.9
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 3.5e-15 84.7 81 55.6
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.6e-15 84.3 71 60.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 4.6e-15 84.3 74 64.9
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 6.0e-15 84.0 72 56.9
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 7.9e-15 83.6 82 57.3
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 7.9e-15 83.6 74 56.8
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 7.9e-15 83.6 74 56.8
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 7.9e-15 83.6 82 56.1
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.0e-14 83.2 81 55.6
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.3e-14 82.8 72 61.1
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.3e-14 82.8 86 54.7
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.8e-14 82.4 74 55.4
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.8e-14 82.4 74 55.4
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.3e-14 82.0 73 56.2
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.3e-14 82.0 84 54.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.9e-14 81.3 75 54.7
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 3.9e-14 81.3 67 67.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 6.7e-14 80.5 70 60.0
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 6.7e-14 80.5 66 60.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 73 57.5
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.1e-13 79.7 67 59.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.9e-13 79.0 88 50.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.5e-13 78.6 66 59.1
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 3.3e-13 78.2 85 55.3
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 3.3e-13 78.2 82 52.4
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.3e-13 77.8 65 61.5
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.3e-12 76.3 69 63.8
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.6e-12 75.9 80 51.2
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-12 75.5 90 47.8
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.8e-12 75.1 83 51.8
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.8e-12 75.1 68 57.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 3.7e-12 74.7 66 63.6
MELO3C006759.2 Cucumis melo HOM05D006810 ORTHO05D008501 6.2e-12 73.9 33 100.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.1e-11 73.2 64 60.9
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.4e-11 72.8 69 56.5
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.8e-11 72.4 91 47.3
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 3.1e-11 71.6 57 64.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 3.1e-11 71.6 85 50.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 5.3e-11 70.9 67 55.2
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.9e-11 70.5 82 50.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 9.0e-11 70.1 97 47.4
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 9.0e-11 70.1 66 53.0
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-10 69.7 80 55.0
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.2e-10 69.7 82 50.0
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.5e-10 69.3 69 53.6
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 2.0e-10 68.9 68 50.0
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 2.6e-10 68.6 82 47.6
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.6e-10 68.6 69 53.6
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.2e-09 65.5 79 46.8
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.8e-09 64.7 69 55.1
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.5e-09 63.9 68 55.9
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.1e-08 63.2 74 43.2
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 7.1e-08 60.5 68 47.1
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 7.1e-08 60.5 58 60.3
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.1e-06 54.3 91 38.5
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.7e-06 53.5 72 47.2


User provided reference genes

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