Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 2.0e-74 282.3 144 100.0
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 4.3e-32 141.7 144 58.3
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 5.6e-32 141.4 161 54.7
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 9.5e-32 140.6 144 59.0
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 1.2e-31 140.2 143 57.3
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 1.2e-31 140.2 144 57.6
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 2.1e-31 139.4 142 57.0
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 2.8e-31 139.0 144 56.2
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 3.6e-31 138.7 144 57.6
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 3.6e-31 138.7 144 57.6
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 4.7e-31 138.3 144 56.9
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 8.1e-31 137.5 144 56.2
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 8.1e-31 137.5 144 56.9
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 8.1e-31 137.5 144 56.9
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 8.1e-31 137.5 144 56.9
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 1.4e-30 136.7 144 56.2
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 1.4e-30 136.7 144 56.2
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 1.8e-30 136.3 142 56.3
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 2.4e-30 136.0 144 56.2
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 3.1e-30 135.6 142 55.6
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 3.1e-30 135.6 140 57.1
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 3.1e-30 135.6 144 55.6
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 3.1e-30 135.6 144 55.6
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 4.0e-30 135.2 144 54.9
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 5.2e-30 134.8 142 54.2
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 6.8e-30 134.4 144 56.2
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 8.9e-30 134.0 142 56.3
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 8.9e-30 134.0 142 54.2
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 8.9e-30 134.0 144 55.6
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 1.2e-29 133.7 144 55.6
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 1.5e-29 133.3 142 54.9
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 1.5e-29 133.3 142 54.9
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 1.5e-29 133.3 142 54.9
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.5e-29 133.3 144 55.6
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 1.5e-29 133.3 144 54.9
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.5e-29 133.3 142 55.6
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 2.0e-29 132.9 144 54.9
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 2.6e-29 132.5 140 55.0
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.4e-29 132.1 144 54.9
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 3.4e-29 132.1 144 54.9
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 4.4e-29 131.7 142 52.8
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 4.4e-29 131.7 142 52.8
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 4.4e-29 131.7 144 55.6
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 4.4e-29 131.7 142 54.9
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 5.8e-29 131.3 144 54.9
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 7.6e-29 131.0 144 54.9
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 7.6e-29 131.0 142 54.9
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 7.6e-29 131.0 142 52.1
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 7.6e-29 131.0 142 53.5
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 7.6e-29 131.0 146 54.1
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 9.9e-29 130.6 143 54.5
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 9.9e-29 130.6 144 53.5
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 9.9e-29 130.6 144 54.2
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 9.9e-29 130.6 144 54.2
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.3e-28 130.2 139 54.7
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.3e-28 130.2 140 54.3
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 1.7e-28 129.8 142 52.8
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 2.2e-28 129.4 144 52.8
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.9e-28 129.0 142 55.6
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 4.9e-28 128.3 144 52.8
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 8.4e-28 127.5 144 52.1
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 1.1e-27 127.1 144 54.2
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.1e-27 127.1 140 52.1
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.4e-27 126.7 144 53.5
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.9e-27 126.3 144 52.8
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.9e-27 126.3 143 53.1
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.9e-27 126.3 143 53.1
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 1.9e-27 126.3 144 52.1
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 3.2e-27 125.6 140 52.9
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 5.4e-27 124.8 146 50.7
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 9.2e-27 124.0 142 52.8
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.6e-26 123.2 139 51.8
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 1.6e-26 123.2 142 52.1
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.1e-26 122.9 144 51.4
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.1e-26 122.9 144 51.4
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.1e-26 122.9 144 51.4
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 2.7e-26 122.5 144 50.7
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 4.6e-26 121.7 144 50.7
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 4.6e-26 121.7 144 50.7
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 4.6e-26 121.7 144 50.7
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 4.6e-26 121.7 144 50.7
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 4.6e-26 121.7 142 49.3
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 4.6e-26 121.7 144 50.7
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 6.0e-26 121.3 144 48.6
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.0e-25 120.6 144 50.0
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.0e-25 120.6 136 52.9
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 1.7e-25 119.8 144 50.0
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 1.7e-25 119.8 144 50.0
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 1.7e-25 119.8 144 50.0
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 1.7e-25 119.8 144 50.0
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 2.3e-25 119.4 144 50.0
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 2.3e-25 119.4 144 50.0
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 2.3e-25 119.4 144 50.0
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.0e-25 119.0 136 52.2
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 3.0e-25 119.0 142 52.8
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 3.9e-25 118.6 144 51.4
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 6.6e-25 117.9 144 50.7
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 2.5e-24 115.9 141 48.9
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 4.3e-24 115.2 140 56.4
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 7.3e-24 114.4 144 48.6
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 7.3e-24 114.4 144 48.6
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 4.7e-23 111.7 144 48.6
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.4e-22 109.4 134 50.0
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 5.2e-22 108.2 144 45.8
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 5.2e-22 108.2 144 45.8
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 9.9e-21 104.0 91 61.5
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.1e-19 100.5 62 74.2
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.2e-19 99.0 60 76.7
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 9.3e-19 97.4 60 76.7
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 1.6e-18 96.7 118 50.8
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 1.7e-17 93.2 125 46.4
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.5e-16 90.1 118 49.2
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.5e-16 89.4 118 48.3
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 4.3e-16 88.6 292 31.2
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 7.3e-16 87.8 120 46.7
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 3.6e-15 85.5 118 46.6
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.0e-13 79.7 112 45.5
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 2.6e-13 79.3 65 64.6
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 9.9e-13 77.4 143 38.5
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-12 75.5 65 61.5
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 7.1e-11 71.2 95 41.1
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 1.6e-10 70.1 94 42.6
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 7.9e-10 67.8 152 34.9
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.9e-09 65.5 67 47.8
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 1.1e-08 63.9 104 37.5
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 5.6e-08 61.6 96 43.8
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 7.4e-08 61.2 118 38.1
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 4.0e-06 55.5 48 60.4


User provided reference genes

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