Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.7e-98 362.1 195 100.0
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.6e-93 345.5 195 94.9
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 3.0e-89 332.0 196 92.9
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.8e-86 322.8 193 89.6
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.5e-80 303.1 194 83.5
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.7e-79 298.5 193 83.4
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.8e-79 298.1 195 83.6
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 6.3e-79 297.7 194 82.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 8.3e-79 297.4 194 82.0
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.8e-78 296.2 192 82.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.1e-78 295.4 191 82.7
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 5.4e-78 294.7 193 82.9
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 5.4e-78 294.7 187 84.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 7.0e-78 294.3 188 83.0
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-77 292.4 185 82.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.5e-77 292.0 190 82.1
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 4.5e-77 291.6 189 81.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 4.5e-77 291.6 188 82.4
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.9e-77 291.2 185 82.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.9e-77 291.2 185 82.7
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 5.9e-77 291.2 198 80.8
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 5.9e-77 291.2 197 80.2
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 7.7e-77 290.8 185 83.2
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.3e-76 290.0 193 80.8
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.7e-76 289.7 188 81.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.3e-76 289.3 191 81.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.9e-76 288.9 195 82.6
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.8e-76 288.5 197 79.7
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.0e-76 288.1 191 81.7
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 5.0e-76 288.1 194 80.4
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.0e-76 288.1 195 78.5
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 5.0e-76 288.1 192 81.8
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 6.5e-76 287.7 177 84.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 6.5e-76 287.7 195 79.5
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 6.5e-76 287.7 191 82.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 79.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.5e-75 286.6 192 80.2
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.5e-75 286.6 190 80.0
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-75 286.6 193 80.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 181 83.4
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.5e-75 285.8 188 81.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.2e-75 285.4 185 83.2
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.2e-74 283.5 192 79.7
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-74 283.1 192 79.2
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-74 283.1 194 78.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.1e-74 282.7 183 80.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 190 79.5
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.1e-74 282.7 190 79.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.6e-74 282.0 175 82.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.6e-74 282.0 184 82.6
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.7e-74 281.6 194 78.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 6.1e-74 281.2 193 78.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 6.1e-74 281.2 191 80.1
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.1e-74 281.2 196 79.1
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 8.0e-74 280.8 185 81.6
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 8.0e-74 280.8 200 77.5
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 8.0e-74 280.8 191 80.1
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.0e-73 280.4 197 77.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 189 78.8
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.4e-73 280.0 192 78.1
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.4e-73 280.0 189 78.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 196 78.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.8e-73 279.6 200 76.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.8e-73 279.6 188 80.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.8e-73 279.6 199 77.9
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.3e-73 279.3 192 78.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.3e-73 279.3 191 79.1
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.0e-73 278.9 190 79.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.2e-73 278.1 192 77.6
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.2e-73 278.1 182 80.8
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.2e-73 278.1 176 81.2
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.2e-73 278.1 190 78.4
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.2e-73 278.1 180 81.7
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.2e-72 276.9 192 77.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.2e-72 276.9 193 78.2
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.2e-72 276.9 191 79.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 4.4e-72 275.0 206 73.3
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.7e-72 274.6 187 79.1
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 5.7e-72 274.6 175 84.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.7e-72 274.6 195 76.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.5e-72 274.2 190 76.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 7.5e-72 274.2 192 76.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 7.5e-72 274.2 192 76.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.5e-72 274.2 191 76.4
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.7e-71 273.1 180 78.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.8e-71 272.3 198 75.3
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.9e-71 271.6 180 78.9
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.1e-70 270.4 188 76.1
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-70 270.4 192 75.5
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-70 270.4 192 75.5
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.1e-70 270.4 192 75.5
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.1e-70 270.4 192 75.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.8e-70 269.6 183 77.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.8e-70 269.6 187 78.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-70 269.2 194 75.3
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.1e-70 268.9 185 77.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 9.2e-70 267.3 194 74.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-69 266.9 191 74.9
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-69 266.9 191 74.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.6e-69 266.5 191 74.9
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.6e-69 266.5 225 68.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.7e-69 265.8 191 74.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 4.5e-69 265.0 184 76.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.9e-69 264.6 191 75.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.0e-68 263.8 235 66.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.3e-68 262.7 234 65.4
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.9e-68 262.3 189 77.2
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.6e-66 256.5 240 64.2
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.0e-65 251.9 168 81.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.0e-65 251.9 161 83.2
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 5.7e-64 248.1 142 92.3
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.9e-63 245.7 190 73.2
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 4.9e-63 245.0 168 80.4
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.0e-61 239.6 251 57.0
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-60 236.9 192 69.3
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.0e-60 235.7 181 68.5
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.9e-60 235.3 183 66.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 5.0e-60 235.0 191 69.6
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 6.2e-58 228.0 141 83.7
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 8.0e-58 227.6 144 82.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 3.1e-57 225.7 183 66.1
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 6.8e-57 224.6 133 85.7
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.6e-56 222.6 138 83.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.4e-54 214.9 138 81.9
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 4.6e-53 211.8 181 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.0e-52 210.7 180 60.6
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.2e-50 203.8 133 81.2
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.6e-48 196.1 125 83.2
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.7e-47 193.4 134 79.9
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-46 190.3 123 78.9
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.7e-45 186.0 199 57.3
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.9e-44 182.2 112 85.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.1e-41 174.1 128 69.5
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.1e-38 164.1 104 82.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-38 162.9 104 81.7
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.4e-38 161.8 111 78.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.6e-36 154.8 115 74.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 8.1e-34 147.9 168 46.4
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-33 147.1 83 88.0
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.0e-33 145.6 104 78.8
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-30 137.1 81 85.2
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.2e-29 134.0 94 79.8
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.6e-29 133.7 91 82.4
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.1e-29 133.3 164 43.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 3.5e-29 132.5 104 70.2
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.5e-27 126.3 171 39.2
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-27 125.6 91 71.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 7.3e-27 124.8 94 62.8
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 3.1e-25 119.4 186 36.6
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 5.3e-25 118.6 77 79.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 6.9e-25 118.2 103 65.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.4e-24 115.9 106 62.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.6e-18 97.1 64 76.6
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-16 90.5 60 73.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.6e-11 72.0 113 45.1
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 9.6e-11 71.2 42 85.7
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 9.6e-11 71.2 114 43.9
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-10 70.5 113 44.2
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-10 70.5 113 44.2
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-10 68.6 113 43.4
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.2e-10 68.2 111 42.3
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 8.2e-10 68.2 67 64.2
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.1e-06 57.8 36 80.6


User provided reference genes

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