Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.3e-151 539.7 275 100.0
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 3.6e-136 488.4 278 91.0
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 2.0e-134 482.6 281 89.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 2.2e-125 452.6 272 86.0
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.5e-86 323.6 243 67.1
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.9e-85 319.3 260 63.8
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 3.7e-85 318.9 258 63.6
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.9e-84 316.6 269 62.5
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.4e-84 316.2 250 64.0
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 7.1e-84 314.7 243 65.0
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.5e-83 312.4 248 60.5
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 3.0e-82 309.3 253 64.8
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.0e-82 309.3 256 60.9
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.1e-81 307.4 251 61.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.5e-81 306.2 251 63.7
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 4.3e-81 305.4 259 62.5
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.2e-80 303.9 268 60.1
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.6e-80 303.5 254 63.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.7e-80 302.0 252 60.3
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 4.7e-80 302.0 253 60.5
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 8.1e-80 301.2 255 60.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.4e-79 300.4 255 61.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.3e-79 299.7 250 61.6
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 2.3e-79 299.7 244 61.9
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 4.0e-79 298.9 248 60.5
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 5.2e-79 298.5 269 61.7
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 6.8e-79 298.1 257 61.9
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 8.9e-79 297.7 257 62.3
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.2e-78 297.4 243 61.7
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.2e-78 297.4 243 61.7
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.6e-78 296.2 257 61.5
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.4e-78 295.8 258 59.7
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 9.9e-78 294.3 244 59.8
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 9.9e-78 294.3 250 60.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.7e-77 293.5 253 59.7
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 2.9e-77 292.7 264 59.1
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 3.7e-77 292.4 243 60.5
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 3.7e-77 292.4 250 63.2
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.9e-77 292.0 251 61.4
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 6.4e-77 291.6 242 61.2
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 6.4e-77 291.6 242 61.2
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.2e-76 289.3 264 58.7
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-75 287.3 244 58.2
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-75 287.3 251 60.6
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.2e-75 287.3 264 58.3
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.7e-74 283.5 257 60.3
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.3e-74 283.1 252 60.7
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 5.1e-74 282.0 255 57.3
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 5.1e-74 282.0 246 60.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.1e-73 280.8 239 61.9
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 2.5e-73 279.6 248 61.7
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 4.3e-73 278.9 246 58.9
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.6e-73 277.7 264 57.2
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.6e-72 276.9 245 58.0
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.6e-72 276.9 240 59.2
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.8e-72 276.2 249 59.4
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.8e-72 276.2 243 58.0
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 6.2e-72 275.0 246 60.6
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.1e-71 274.2 253 56.1
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.1e-71 274.2 246 57.7
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.8e-71 273.5 257 56.4
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.4e-71 273.1 239 60.3
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 3.1e-71 272.7 243 58.4
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 3.1e-71 272.7 243 58.4
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 3.1e-71 272.7 243 58.4
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.1e-71 272.7 239 58.6
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.1e-71 272.7 251 57.4
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.1e-71 272.7 251 57.4
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.1e-71 272.7 264 56.4
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 4.0e-71 272.3 243 57.2
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 6.8e-71 271.6 263 54.8
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 6.8e-71 271.6 238 58.0
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.5e-70 270.4 252 57.9
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 2.0e-70 270.0 243 58.0
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 2.0e-70 270.0 243 58.0
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 3.4e-70 269.2 243 57.6
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 5.8e-70 268.5 241 57.3
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.6e-70 268.1 208 66.3
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.3e-69 267.3 245 54.3
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.7e-69 266.9 254 56.3
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.2e-69 266.5 255 56.9
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.2e-69 266.5 242 55.0
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.9e-69 266.2 256 57.0
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.8e-69 265.8 249 57.8
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.4e-68 263.8 255 56.9
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 4.2e-68 262.3 262 54.2
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 5.4e-68 261.9 255 55.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.5e-67 259.2 262 54.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 3.5e-67 259.2 229 58.1
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.0e-66 257.7 243 56.0
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.7e-66 256.9 243 56.0
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 1.5e-65 253.8 245 53.9
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.5e-65 253.8 224 56.7
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.5e-65 253.1 243 55.6
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.3e-65 252.7 256 52.7
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.6e-64 249.2 224 56.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 4.8e-64 248.8 264 51.9
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.0e-63 245.7 246 52.4
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 9.0e-63 244.6 241 55.6
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.5e-62 243.8 248 51.6
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.4e-62 242.7 240 56.2
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 5.8e-62 241.9 228 53.9
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.6e-62 241.5 227 56.4
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.2e-61 240.0 257 51.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 3.8e-61 239.2 232 55.6
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 4.9e-61 238.8 216 55.1
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 6.4e-61 238.4 267 51.7
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.5e-57 227.3 255 51.4
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-56 224.2 228 54.4
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.4e-55 220.7 248 50.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.5e-54 217.2 198 59.6
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 5.8e-54 215.3 263 47.9
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.4e-53 211.5 234 52.6
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 8.4e-53 211.5 224 52.2
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.9e-52 210.3 234 52.1
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.4e-52 209.9 200 57.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.0e-51 205.3 232 48.3
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 9.0e-47 191.4 232 47.0
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.3e-45 187.6 238 45.8
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.7e-43 179.9 241 42.3
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.6e-43 179.1 133 63.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.1e-34 149.1 114 59.6
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.1e-34 149.1 261 37.9
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.7e-34 148.7 236 37.7
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.9e-33 147.1 173 48.0
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.5e-33 146.7 264 38.3
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.3e-33 146.4 237 36.7
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 1.6e-32 144.1 134 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 8.2e-32 141.7 233 39.1
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.9e-31 138.7 150 49.3
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 2.6e-30 136.7 213 38.5
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.9e-30 135.6 140 49.3
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 5.9e-30 135.6 237 34.6
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.5e-29 131.7 159 49.1
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 2.5e-25 120.2 230 34.8
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 2.5e-25 120.2 243 32.9
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 4.2e-12 76.3 85 49.4
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-10 71.2 81 55.6
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.3e-08 64.7 143 31.5
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 2.2e-08 63.9 72 50.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 2.2e-08 63.9 72 50.0
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.2e-06 58.2 87 37.9


User provided reference genes

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