Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G006040 Citrullus lanatus HOM05D006719 ORTHO05D007063 1.2e-37 160.2 151 100.0
CsaV3_3G014580 Cucumis sativus L. HOM05D006719 ORTHO05D007063 1.2e-32 143.7 151 94.7
MELO3C006659.2 Cucumis melo HOM05D006719 ORTHO05D007063 2.0e-32 142.9 151 94.0
Sed0000550 Sechium edule HOM05D006719 ORTHO05D007063 1.3e-18 97.1 144 80.6
Sed0003703 Sechium edule HOM05D006719 ORTHO05D007063 1.7e-15 86.7 143 77.6
GSVIVG01017752001 Vitis vinifera HOM05D006719 ORTHO05D007063 8.8e-12 74.3 153 71.2
CiPaw.02G083300 Carya illinoinensis HOM05D006719 ORTHO05D007063 9.7e-11 70.9 131 73.3
Cfa015380 Carpinus fangiana HOM05D006719 ORTHO05D007063 1.7e-10 70.1 143 38.5
COL.COLO4_13881 Corchorus olitorius HOM05D006719 ORTHO05D007063 1.1e-09 67.4 154 63.6
Prupe.1G137900 Prunus persica HOM05D006719 ORTHO05D007063 4.1e-09 65.5 146 63.7
CiPaw.01G149100 Carya illinoinensis HOM05D006719 ORTHO05D007063 5.3e-09 65.1 49 73.5
Gohir.D10G170100 Gossypium hirsutum HOM05D006719 ORTHO05D007063 5.3e-09 65.1 146 63.7
QL06p008791 Quercus lobata HOM05D006719 ORTHO05D007063 5.3e-09 65.1 133 74.4
MD13G1169300 Malus domestica HOM05D006719 ORTHO05D007063 7.0e-09 64.7 138 65.2
PSO170G6252 Papaver somniferum HOM05D006719 ORTHO05D007063 7.0e-09 64.7 133 66.9
PSO210G7501 Papaver somniferum HOM05D006719 ORTHO05D007063 7.0e-09 64.7 133 69.9
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 7.0e-09 64.7 132 78.0
Ciclev10006148m.g Citrus clementina HOM05D006719 ORTHO05D007063 9.1e-09 64.3 129 61.2
Thecc.04G284000 Theobroma cacao HOM05D006719 ORTHO05D007063 9.1e-09 64.3 143 63.6
Potri.010G024600 Populus trichocarpa HOM05D006719 ORTHO05D007063 1.6e-08 63.5 141 61.7
Nn3g21430 Nelumbo nucifera HOM05D006719 ORTHO05D007063 2.0e-08 63.2 142 67.6
TAR362G0876 Trochodendron aralioides HOM05D006719 ORTHO05D007063 2.0e-08 63.2 122 75.4
MD16G1170500 Malus domestica HOM05D006719 ORTHO05D007063 3.5e-08 62.4 147 66.7
Manes.03G194500 Manihot esculenta HOM05D006719 ORTHO05D007063 3.5e-08 62.4 152 64.5
CSS0008404 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 4.5e-08 62.0 140 60.0
CSS0019267 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 4.5e-08 62.0 140 60.0
Gorai.011G189600 Gossypium raimondii HOM05D006719 ORTHO05D007063 5.9e-08 61.6 146 63.0
Cpa.g.sc16.165 Carica papaya HOM05D006719 ORTHO05D007063 7.7e-08 61.2 46 67.4
Phvul.009G247500 Phaseolus vulgaris HOM05D006719 ORTHO05D007063 1.0e-07 60.8 133 69.2
Sopen01g028510 Solanum pennellii HOM05D006719 ORTHO05D007063 1.0e-07 60.8 149 65.1
VMungo1309G0351 Vigna mungo HOM05D006719 ORTHO05D007063 1.3e-07 60.5 131 59.5
Atru.chr4.2828 Acer truncatum HOM05D006719 ORTHO05D007063 1.7e-07 60.1 144 67.4
Actinidia40259 Actinidia chinensis HOM05D006719 ORTHO05D007063 1.7e-07 60.1 144 69.4
vmacro08144 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.7e-07 60.1 141 63.1
vmacro22972 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.7e-07 60.1 141 63.1
HanXRQChr08g0227651 Helianthus annuus HOM05D006719 ORTHO05D007063 2.2e-07 59.7 117 71.8
Nn4g25876 Nelumbo nucifera HOM05D006719 ORTHO05D007063 2.2e-07 59.7 36 80.6
Duzib212G0625 Durio zibethinus HOM05D006719 ORTHO05D007063 3.8e-07 58.9 150 58.0
Gorai.006G263400 Gossypium raimondii HOM05D006719 ORTHO05D007063 3.8e-07 58.9 143 57.3
Peaxi162Scf00024g00231 Petunia axillaris HOM05D006719 ORTHO05D007063 3.8e-07 58.9 123 69.9
PGSC0003DMG400011322 Solanum tuberosum HOM05D006719 ORTHO05D007063 3.8e-07 58.9 149 69.1
Duzib151G0940 Durio zibethinus HOM05D006719 ORTHO05D007063 5.0e-07 58.5 161 54.0
ECA233G1326 Erigeron canadensis HOM05D006719 ORTHO05D007063 5.0e-07 58.5 119 68.9
Peaxi162Scf00534g00017 Petunia axillaris HOM05D006719 ORTHO05D007063 5.0e-07 58.5 146 32.9
Solyc01g066900.4 Solanum lycopersicum HOM05D006719 ORTHO05D007063 5.0e-07 58.5 149 61.7
TWI09G1121 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 5.0e-07 58.5 135 71.1
Hma1.2p1_2670F.1_g326650 Hydrangea macrophylla HOM05D006719 ORTHO05D007063 6.5e-07 58.2 135 66.7
Medtr2g436860 Medicago truncatula HOM05D006719 ORTHO05D007063 6.5e-07 58.2 47 72.3
Dinv44385 Davidia involucrata HOM05D006719 ORTHO05D007063 8.5e-07 57.8 148 62.8
Glyma.09G045300 Glycine max HOM05D006719 ORTHO05D007063 8.5e-07 57.8 131 76.3
Gohir.A10G163700 Gossypium hirsutum HOM05D006719 ORTHO05D007063 8.5e-07 57.8 150 62.0
Oeu037752.1 Olea europaea HOM05D006719 ORTHO05D007063 8.5e-07 57.8 133 66.2
Lsat_1_v5_gn_6_15060 Lactuca sativa HOM05D006719 ORTHO05D007063 1.1e-06 57.4 45 68.9
TPR.G425 Trifolium pratense HOM05D006719 ORTHO05D007063 1.1e-06 57.4 121 80.2
TWI53G1176 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 1.5e-06 57.0 147 68.7
Manes.15G012900 Manihot esculenta HOM05D006719 ORTHO05D007063 1.9e-06 56.6 156 66.7
CANSAT78G1100 Cannabis sativa HOM05D006719 ORTHO05D007063 2.5e-06 56.2 49 67.3
Gohir.A09G239500 Gossypium hirsutum HOM05D006719 ORTHO05D007063 2.5e-06 56.2 48 66.7
Gohir.D09G240400 Gossypium hirsutum HOM05D006719 ORTHO05D007063 2.5e-06 56.2 48 66.7
Lj6g0006694 Lotus japonicus HOM05D006719 ORTHO05D007063 2.5e-06 56.2 152 66.4
Peaxi162Scf00024g00041 Petunia axillaris HOM05D006719 ORTHO05D007063 2.5e-06 56.2 138 63.0
AT4G15790 Arabidopsis thaliana HOM05D006719 ORTHO05D007063 7.2e-06 54.7 54 57.4
BraA01t02080Z Brassica rapa HOM05D020768 ORTHO05D007063 7.2e-06 54.7 51 62.7
DCAR_030531 Daucus carota HOM05D006719 ORTHO05D007063 9.4e-06 54.3 46 65.2
Potri.008G207500 Populus trichocarpa HOM05D006719 ORTHO05D007063 9.4e-06 54.3 143 56.6
Sc19g0005170 Simmondsia chinensis HOM05D006719 ORTHO05D007063 9.4e-06 54.3 156 62.8


User provided reference genes

Program Settings