Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 5.0e-221 770.8 385 100.0
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 3.2e-191 671.8 385 87.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 6.2e-187 657.5 383 85.4
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 6.5e-152 541.2 321 83.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 9.2e-114 414.5 391 56.0
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.0e-113 413.3 391 54.7
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-110 404.1 388 55.7
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.8e-110 402.9 392 54.1
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 6.1e-110 401.7 397 53.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.0e-109 401.0 394 54.1
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.4e-109 400.6 397 53.1
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 5.2e-109 398.7 404 54.0
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.0e-108 396.7 382 53.9
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.7e-108 395.2 392 53.1
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.7e-107 393.7 397 52.4
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 6.4e-107 391.7 382 53.9
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 8.3e-107 391.3 381 54.1
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.1e-106 391.0 391 52.7
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.8e-106 390.2 378 55.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.2e-106 389.4 387 53.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.1e-106 389.0 384 52.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.4e-106 388.7 382 53.7
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 5.4e-106 388.7 382 53.9
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 7.0e-106 388.3 317 59.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 9.2e-106 387.9 389 53.7
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.2e-105 387.5 384 52.1
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.2e-105 387.5 389 52.4
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.6e-105 387.1 384 55.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.0e-105 386.7 382 52.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.7e-105 386.3 389 51.9
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.7e-104 383.6 389 53.5
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.7e-104 383.6 318 57.9
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.3e-104 383.3 399 52.6
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 3.0e-104 382.9 387 52.2
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.9e-104 382.5 319 59.2
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.9e-104 382.5 389 52.2
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.9e-104 382.5 392 54.3
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 5.0e-104 382.1 398 52.0
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.9e-103 380.2 314 58.9
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.5e-103 379.8 386 52.1
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.5e-103 379.8 386 51.6
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 3.3e-103 379.4 391 51.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 4.3e-103 379.0 382 52.6
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.3e-103 378.3 384 50.5
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 9.5e-103 377.9 387 50.6
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.2e-102 377.5 384 54.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.1e-102 376.7 333 55.3
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.1e-102 376.7 392 50.5
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.6e-102 375.9 384 51.3
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.7e-102 375.6 384 52.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.4e-101 374.0 382 51.0
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 6.8e-101 371.7 318 57.2
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 8.9e-101 371.3 392 50.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.5e-100 370.5 385 50.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.4e-100 369.4 387 50.4
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 4.4e-100 369.0 383 51.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.5e-100 368.2 384 49.7
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.2e-99 366.7 389 51.7
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.9e-99 365.5 384 51.8
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.2e-97 360.9 318 56.6
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.0e-97 360.1 317 57.1
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.0e-97 360.1 383 51.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.0e-97 360.1 383 51.7
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.0e-97 360.1 397 48.4
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.0e-97 360.1 410 50.7
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.0e-97 358.6 362 50.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 7.8e-97 358.2 383 51.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.0e-96 357.8 314 53.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-96 357.1 396 49.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.3e-96 356.7 453 46.1
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.3e-96 356.7 324 54.6
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.0e-96 356.3 389 50.4
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.0e-96 356.3 318 54.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 6.6e-96 355.1 394 50.0
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 8.6e-96 354.8 393 50.1
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.5e-95 354.0 392 48.5
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.5e-95 354.0 333 53.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.2e-94 350.9 396 48.5
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 1.2e-94 350.9 311 57.2
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.6e-94 350.5 324 53.7
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 2.1e-94 350.1 331 54.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.6e-94 349.4 317 53.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 6.2e-94 348.6 391 48.8
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.3e-93 346.7 322 55.6
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 6.8e-93 345.1 303 54.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-92 344.4 322 54.7
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.0e-92 343.6 383 48.3
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.4e-92 342.8 298 54.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.4e-92 342.8 323 53.6
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 5.8e-92 342.0 295 54.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 9.9e-92 341.3 317 53.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.7e-91 340.5 319 53.6
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.7e-91 340.5 391 45.5
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 3.2e-90 336.3 405 45.7
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.5e-89 332.8 391 44.8
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.6e-87 325.5 297 55.6
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 3.6e-86 322.8 313 53.4
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 8.9e-85 318.2 317 51.4
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 3.8e-83 312.8 302 53.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 4.9e-83 312.4 319 49.5
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.4e-83 312.0 332 50.6
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.2e-81 307.8 319 48.6
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 5.1e-80 302.4 298 48.7
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.8e-77 293.9 331 48.9
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.2e-76 291.2 330 47.3
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.9e-75 286.6 289 54.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.2e-74 282.7 302 49.3
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 7.8e-73 278.5 275 52.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.0e-72 278.1 390 39.7
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.5e-71 273.5 277 53.4
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.8e-68 262.3 230 55.7
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 8.7e-64 248.4 363 41.3
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.0e-56 224.9 385 39.7
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.5e-55 220.3 275 47.3
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.4e-50 204.5 253 45.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 7.9e-49 198.7 256 42.2
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.1e-37 159.8 133 57.1
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 7.7e-36 155.6 247 39.7
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.9e-35 153.7 115 63.5
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 5.5e-34 149.4 333 30.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.0e-31 141.0 313 31.3
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.1e-29 135.2 178 39.3
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.8e-27 126.7 147 42.2
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 8.8e-24 115.5 76 67.1
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 9.7e-23 112.1 113 54.0
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 8.2e-22 109.0 150 43.3
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 5.3e-21 106.3 256 28.1
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.7e-19 101.3 297 23.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.1e-18 98.6 217 30.0
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.2e-18 97.1 68 61.8
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 2.0e-15 87.8 123 42.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.3e-14 85.1 94 50.0
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.3e-13 79.7 115 40.0
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.9e-11 73.9 305 22.3
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.8e-08 64.7 85 44.7
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.0e-08 63.5 39 66.7


User provided reference genes

Program Settings