Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005750 Citrullus lanatus HOM05D004181 ORTHO05D018525 8.1e-114 413.7 200 100.0
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 8.3e-18 94.7 51 94.1
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 8.3e-18 94.7 51 94.1
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 1.1e-17 94.4 47 100.0
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 3.2e-17 92.8 46 100.0
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 5.4e-17 92.0 53 84.9
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 5.4e-17 92.0 53 84.9
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 1.2e-16 90.9 51 88.2
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.6e-16 90.5 51 88.2
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 2.1e-16 90.1 51 88.2
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 2.1e-16 90.1 51 88.2
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 2.7e-16 89.7 53 83.0
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 2.7e-16 89.7 51 88.2
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 2.7e-16 89.7 51 86.3
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 2.7e-16 89.7 53 83.0
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 4.6e-16 89.0 51 86.3
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 6.0e-16 88.6 53 81.1
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 6.0e-16 88.6 53 81.1
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 6.0e-16 88.6 53 81.1
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 6.0e-16 88.6 51 86.3
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 6.0e-16 88.6 53 81.1
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 7.8e-16 88.2 64 75.0
arahy.Tifrunner.gnm1.ann1.EJR7TM Arachis hypogaea HOM05D004181 ORTHO05D018525 7.8e-16 88.2 64 75.0
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 7.8e-16 88.2 51 86.3
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 7.8e-16 88.2 51 84.3
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 7.8e-16 88.2 51 84.3
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.8e-16 88.2 76 65.8
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 7.8e-16 88.2 51 86.3
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.0e-15 87.8 51 84.3
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 1.0e-15 87.8 55 80.0
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 1.3e-15 87.4 51 82.4
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.3e-15 87.4 47 89.4
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.7e-15 87.0 51 84.3
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.7e-15 87.0 51 84.3
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.7e-15 87.0 51 84.3
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 3.0e-15 86.3 51 84.3
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 79.2
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 81.1
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 81.1
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 81.1
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 81.1
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 3.0e-15 86.3 51 84.3
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 3.0e-15 86.3 51 84.3
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 81.1
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 3.0e-15 86.3 53 79.2
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 3.0e-15 86.3 51 84.3
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 3.9e-15 85.9 51 84.3
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 3.9e-15 85.9 51 82.4
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 3.9e-15 85.9 51 82.4
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 3.9e-15 85.9 53 79.2
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 5.1e-15 85.5 53 77.4
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 5.1e-15 85.5 51 82.4
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 5.1e-15 85.5 53 77.4
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 5.1e-15 85.5 53 77.4
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.1e-15 85.5 51 82.4
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 5.1e-15 85.5 51 82.4
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 5.1e-15 85.5 51 84.3
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 6.6e-15 85.1 53 77.4
Lalb_Chr15g0087101 Lupinus albus HOM05D004181 ORTHO05D005610 6.6e-15 85.1 51 82.4
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 6.6e-15 85.1 51 82.4
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 8.6e-15 84.7 51 80.4
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 8.6e-15 84.7 51 82.4
SEGI_33678 Sequoiadendron giganteum HOM05D004181 ORTHO05D018525 8.6e-15 84.7 47 87.2
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 8.6e-15 84.7 51 82.4
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 1.1e-14 84.3 51 82.4
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.1e-14 84.3 53 79.2
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.1e-14 84.3 51 82.4
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 1.1e-14 84.3 53 77.4
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 1.5e-14 84.0 51 80.4
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.5e-14 84.0 51 80.4
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.5e-14 84.0 51 80.4
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.5e-14 84.0 51 80.4
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.5e-14 84.0 51 80.4
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 1.9e-14 83.6 51 80.4
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 1.9e-14 83.6 51 78.4
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 2.5e-14 83.2 51 82.4
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 2.5e-14 83.2 51 82.4
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 2.5e-14 83.2 51 78.4
Oeu026208.1 Olea europaea HOM05D004181 ORTHO05D005610 2.5e-14 83.2 53 77.4
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 2.5e-14 83.2 51 78.4
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 3.3e-14 82.8 51 78.4
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 4.3e-14 82.4 51 78.4
Cpa.g.sc16.104 Carica papaya HOM05D004181 ORTHO05D018525 5.6e-14 82.0 46 84.8
COL.COLO4_13940 Corchorus olitorius HOM05D004181 ORTHO05D018525 5.6e-14 82.0 50 78.0
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 5.6e-14 82.0 51 80.4
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 7.3e-14 81.6 51 80.4
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 7.3e-14 81.6 51 74.5
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
SHI00294 Sapria himalayana HOM05D004181 ORTHO05D018525 9.5e-14 81.3 55 74.5
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 9.5e-14 81.3 51 80.4
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 1.6e-13 80.5 51 76.5
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 2.1e-13 80.1 51 72.5
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 78.4
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 2.8e-13 79.7 51 74.5
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 3.6e-13 79.3 51 76.5
PGSC0003DMG400029187 Solanum tuberosum HOM05D004181 ORTHO05D018525 4.7e-13 79.0 51 78.4
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 6.2e-13 78.6 51 72.5
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 8.1e-13 78.2 53 67.9
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 6.8e-12 75.1 50 72.0
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 8.9e-12 74.7 53 66.0
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 2.0e-11 73.6 53 67.9
PGSC0003DMG400029186 Solanum tuberosum HOM05D004181 ORTHO05D005610 2.6e-11 73.2 55 70.9
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 3.3e-06 56.2 35 82.9


User provided reference genes

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