Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 9.3e-153 543.5 273 100.0
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 4.4e-110 401.7 204 95.1
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.8e-109 399.1 204 95.1
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 6.3e-109 397.9 219 90.4
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 3.7e-101 372.1 204 90.2
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 2.7e-96 355.9 204 84.3
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 3.0e-95 352.4 202 83.2
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 3.0e-95 352.4 202 84.7
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 4.0e-95 352.1 204 83.8
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 4.0e-95 352.1 200 84.0
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 4.0e-95 352.1 200 84.5
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 5.2e-95 351.7 200 85.0
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.0e-94 349.7 202 83.2
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 2.0e-94 349.7 200 83.5
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 2.6e-94 349.4 200 83.0
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 4.4e-94 348.6 204 80.9
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 5.7e-94 348.2 204 81.9
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 5.7e-94 348.2 201 84.6
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 7.5e-94 347.8 204 83.8
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 7.5e-94 347.8 202 82.2
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 7.5e-94 347.8 202 82.2
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 2.8e-93 345.9 200 84.5
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 3.7e-93 345.5 204 80.9
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 4.8e-93 345.1 204 80.9
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 8.3e-93 344.4 202 81.7
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 1.1e-92 344.0 204 83.3
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.8e-92 343.2 204 81.9
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.4e-92 342.8 204 80.4
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 3.1e-92 342.4 202 80.7
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 3.1e-92 342.4 200 81.5
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 4.1e-92 342.0 200 81.5
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 7.0e-92 341.3 204 78.4
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 9.1e-92 340.9 204 80.9
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 9.1e-92 340.9 205 80.0
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 2.0e-91 339.7 202 80.2
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 3.5e-91 339.0 203 81.8
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 3.5e-91 339.0 202 78.2
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 3.5e-91 339.0 202 80.2
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 4.5e-91 338.6 202 80.7
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 5.9e-91 338.2 202 81.2
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.0e-90 337.4 202 78.2
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 2.2e-90 336.3 202 79.7
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 2.2e-90 336.3 202 81.7
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 3.8e-90 335.5 202 78.7
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 5.0e-90 335.1 202 81.2
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 5.0e-90 335.1 203 81.8
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 6.5e-90 334.7 202 79.2
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.5e-90 334.3 197 79.7
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 8.5e-90 334.3 202 79.2
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 1.1e-89 334.0 200 79.5
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.1e-89 334.0 202 78.7
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 1.9e-89 333.2 204 79.4
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.9e-89 333.2 202 78.7
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 2.5e-89 332.8 204 78.9
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 1.2e-88 330.5 205 76.6
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.6e-88 330.1 204 81.4
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 2.7e-88 329.3 197 79.2
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 3.6e-88 328.9 203 78.3
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 8.0e-88 327.8 205 77.1
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 8.0e-88 327.8 205 77.1
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 8.0e-88 327.8 205 76.1
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 1.4e-87 327.0 207 77.8
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 5.2e-87 325.1 207 77.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.2e-87 325.1 200 76.0
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 8.8e-87 324.3 207 76.3
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 2.0e-86 323.2 205 76.6
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 2.0e-86 323.2 205 75.6
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 2.6e-86 322.8 199 78.9
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 2.6e-86 322.8 204 77.0
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.4e-86 322.4 205 75.1
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 3.4e-86 322.4 203 77.8
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 4.4e-86 322.0 200 77.0
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 7.5e-86 321.2 204 77.0
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 9.8e-86 320.9 205 77.1
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 1.7e-85 320.1 200 75.0
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 2.2e-85 319.7 205 74.6
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 2.8e-85 319.3 205 74.6
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 3.7e-85 318.9 205 74.6
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 3.7e-85 318.9 205 74.6
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 6.3e-85 318.2 205 74.6
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 6.3e-85 318.2 205 74.6
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.1e-84 317.4 207 75.4
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.6e-83 313.5 196 75.0
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.7e-83 312.8 200 75.0
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 2.7e-83 312.8 200 75.0
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 1.0e-82 310.8 203 73.9
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.6e-80 303.5 202 75.2
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 4.7e-80 302.0 186 78.5
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 8.9e-79 297.7 199 72.4
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 1.2e-78 297.4 195 74.9
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 3.4e-78 295.8 200 75.0
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 8.3e-77 291.2 207 71.0
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 9.2e-76 287.7 203 69.5
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.6e-75 287.0 192 74.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 2.9e-74 282.7 194 68.6
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 8.6e-74 281.2 203 68.5
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 7.3e-73 278.1 200 70.5
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 3.6e-72 275.8 204 67.6
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.5e-70 270.4 204 68.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.2e-68 262.7 174 68.4
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 4.6e-67 258.8 149 81.2
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.3e-66 256.5 194 62.4
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 3.3e-65 252.7 186 66.7
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 5.6e-65 251.9 150 80.7
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 9.5e-65 251.1 147 82.3
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 4.7e-64 248.8 197 61.4
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.7e-59 233.0 248 53.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.0e-58 231.1 129 83.7
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 5.1e-58 228.8 147 73.5
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 3.9e-50 202.6 197 51.8
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 3.8e-45 186.0 182 48.4
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 3.4e-38 162.9 88 86.4
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 2.1e-32 143.7 194 45.4
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 2.3e-26 123.6 88 69.3
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.9e-26 122.9 96 59.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.3e-25 119.8 85 67.1
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 1.5e-22 110.9 87 62.1
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 4.5e-22 109.4 97 54.6
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 3.7e-16 89.7 67 62.7
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 4.1e-15 86.3 54 72.2
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 6.9e-15 85.5 143 39.9
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 7.4e-09 65.5 41 65.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.6e-08 64.3 155 30.3
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 1.8e-07 60.8 38 71.1
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 9.0e-07 58.5 132 28.8
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.2e-06 58.2 132 28.0
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.2e-06 58.2 132 28.0
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.6e-06 57.0 132 28.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.6e-06 57.0 132 31.1
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.6e-06 57.0 132 31.1
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.6e-06 57.0 132 31.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.6e-06 57.0 132 31.1
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 3.4e-06 56.6 132 31.1
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 4.5e-06 56.2 148 29.7
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 4.5e-06 56.2 148 29.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 7.7e-06 55.5 132 28.8


User provided reference genes

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