Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 2001.9 1004 100.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1713.0 952 91.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1693.7 952 90.7
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 833 91.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 967 79.7
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 982 78.9
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 958 80.4
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 966 79.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 962 79.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1474.9 943 81.8
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 956 80.4
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 943 80.6
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 898 83.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 962 79.0
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1464.9 884 84.2
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 963 78.6
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1462.6 963 78.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1461.8 951 80.1
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 969 78.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1461.0 933 80.1
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 972 78.5
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 884 83.9
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 896 82.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 961 78.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 983 76.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 945 77.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 1055 73.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 965 78.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1445.3 944 78.5
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 959 77.9
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 864 85.0
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1439.5 965 77.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 954 78.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1437.6 972 76.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 950 77.1
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 958 77.7
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 947 77.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 880 83.1
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 932 79.7
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 864 83.1
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1426.0 939 78.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 878 82.1
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 960 76.2
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 960 76.2
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 958 77.7
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 878 82.3
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1422.9 892 81.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1422.1 889 81.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 911 79.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1421.0 960 75.9
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1419.4 877 82.4
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 988 75.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1418.7 919 78.8
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1416.0 968 75.3
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 957 75.9
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 953 76.5
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1413.7 965 76.8
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 880 81.7
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1405.2 965 76.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1402.1 926 76.6
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1401.0 863 81.9
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 881 80.4
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1399.4 941 76.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1395.6 868 80.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1395.6 879 80.1
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1391.3 908 79.5
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 863 81.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1386.7 847 82.3
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1386.3 863 81.1
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1385.5 851 82.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1384.4 863 80.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1377.5 895 78.4
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 870 81.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 863 80.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1373.6 847 82.3
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1371.7 877 80.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 931 75.8
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1371.3 894 77.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1369.0 927 75.0
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1368.2 940 75.3
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1365.9 914 76.7
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1365.5 863 80.3
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1365.5 930 75.1
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 847 81.9
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1364.0 893 79.2
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1362.4 863 78.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1359.7 833 82.7
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1359.0 911 77.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1358.6 873 78.5
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 931 75.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 931 75.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1357.0 931 75.0
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1354.0 931 74.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1354.0 847 81.6
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1354.0 880 76.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1352.4 862 79.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1351.7 953 73.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1349.3 864 78.8
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1347.0 938 74.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 878 77.4
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 878 77.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1346.3 953 72.6
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1345.5 953 72.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1340.9 892 76.9
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1340.9 887 75.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1338.2 863 78.1
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1325.1 874 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 891 74.0
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1317.4 847 78.3
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1314.3 1054 67.9
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1312.7 833 78.9
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1307.4 955 72.7
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1302.7 884 74.0
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1292.3 886 76.0
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1286.2 849 76.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1285.0 877 73.5
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1279.6 863 73.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1276.2 823 78.5
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1267.3 763 84.0
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1266.1 803 78.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1243.0 892 72.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1242.6 891 73.1
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1242.3 863 74.7
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1239.6 803 79.6
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1206.4 737 83.0
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1194.1 870 73.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1187.6 875 73.1
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1164.4 843 72.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1096.6 719 76.1
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1094.3 769 73.6
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1092.8 847 65.1
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1080.5 863 66.2
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1078.2 865 63.5
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 9.9e-285 983.8 570 85.3
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 2.7e-282 975.7 622 78.8
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 6.4e-268 927.9 873 56.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.4e-246 856.3 564 77.3
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.4e-225 787.3 891 50.4
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.4e-206 722.2 494 76.5
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.4e-190 671.0 544 67.3
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-188 664.8 521 69.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.0e-184 650.6 440 77.0
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 3.2e-182 643.3 708 51.3
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 4.4e-168 596.3 409 75.6
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 3.0e-156 557.0 450 67.1
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 6.4e-151 539.3 327 81.3
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 3.3e-139 500.4 391 67.5
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 3.3e-131 473.8 285 82.8
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.5e-104 384.0 412 53.4
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.0e-103 382.5 321 65.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-89 334.3 281 64.1
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.6e-69 267.7 231 62.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 8.0e-69 266.5 227 64.8
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-64 252.7 216 61.6
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 7.5e-59 233.4 151 76.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-42 179.5 268 42.9
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.6e-39 167.2 114 71.1
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.1e-38 166.4 119 69.7
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 3.5e-32 144.8 85 81.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-30 138.7 83 80.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 8.1e-29 133.7 90 71.1
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.4e-28 132.9 81 82.7
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 4.6e-24 117.9 452 27.4
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 6.0e-24 117.5 95 65.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.3e-23 115.5 130 53.1
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.9e-18 98.6 56 78.6
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.8e-13 82.0 57 73.7
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 8.2e-13 80.5 63 61.9
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-11 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-11 74.7 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 7.2e-09 67.4 42 73.8
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.2e-08 66.6 43 72.1
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 3.6e-08 65.1 46 71.7
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-07 62.4 43 69.8


User provided reference genes

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